Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq241 376 2e-99 seq180 159 3e-34 seq55 105 6e-18 seq112 89.7 5e-13 >seq241 Length=120793 Score = 376 bits (416), Expect = 2e-99 Identities = 1234/1894 (65%), Gaps = 70/1894 (4%) Strand=Plus/Plus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 |||||||| || ||| | | || || ||||| || || || || | || ||||| || Sbjct 69254 GTAAACTGAATAGCGCTGGACGCGGGCTTGGTACGGAGGTAGTAAGTTCCAGTCTTGAGC 69313 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| ||||||| ||||||| || ||||| || | | || | | || | | Sbjct 69314 CCCTTCTTCCAACCGTAAAAGTGCATCGAGGTGAGCTGACCGAAGGTGGGAGCTGAAAGG 69373 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | | |||| ||||||| ||| ||| || || ||||| ||||| ||||| | | Sbjct 69374 TGGATGTTGAGCGACTGAGACTGGCAGATGAATGCACCTCGGTCGGCAGCCATGT----C 69429 Query 22295 AATGTACGCATC--GAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGG 22350 |||| || | | | || ||||||||||||||||| || | | |||| |||| Sbjct 69430 AATGATGGCCTTCTGGCTGATCTCCCATACGGTCTTGTAGAGCTTCTTGAT-----ACGG 69484 Query 22351 TATCG-ATTC---GATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 | | || | || | | ||||| || || | | ||||| || || || Sbjct 69485 TCGGGGATGCCGGGAACGTTCTGGATCGAACCACCGTGGGCAATGATGCGGTTCTTCATG 69544 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAA----TCTTTGACCAGATGACGG-TTCACCA 22460 || |||||||||||||| | || |||| || || || | | || || |||| Sbjct 69545 GTGTCGTTCCACAAACC--TTGC--TCAACGAGCTCGCGGAGCA-ACCAGGGATTGACCA 69599 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 | || |||||||||| | || || || |||||||||||| ||| | ||||| || Sbjct 69600 CCTGGAACTCGCCGGCGAGTACACGACGAGAGTAAATGTTGGAAGTGTAAGGTTCAAAGC 69659 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 | || ||| || || |||||| || || ||||| |||||||| || | || |||| Sbjct 69660 ACTCGTTGAAACCGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAGGAGCG 69719 Query 22581 AGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640 | || | || |||||||| | ||| || |||||| | ||||||||| || || | Sbjct 69720 AATTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGGCCGGCCCAGTCCCAGAGGTCCG 69779 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCC 22698 | || || ||| ||||||| ||||| || | | | || |||| || || ||| Sbjct 69780 AAGGGGTGACAC---CCCACATGTCGTACTGAAGCTCACCCTGCGAAGCG--GGCGAGCC 69834 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA-GCTCGCCTCCAACGCGC 22757 | || || ||||| | || | | || || ||||| | |||| || | ||| Sbjct 69835 GGCATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGG 69893 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GC----GGCGACGCTTTC 22812 ||| || || ||||| ||||| | || || || || || |||||| | Sbjct 69894 CGTGGTAGATGGTCTCAAAGATCTGAACATT-AAGACGACGAGCCTCGGGCGACTCA--- 69949 Query 22813 GTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | ||| || | ||| |||| ||| ||||| || | |||||| || || |||||||| | Sbjct 69950 --AAGGCGTAGCCCATGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGG 70007 Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 | |||| || || ||| ||||| | ||||| | || ||||| Sbjct 70008 GACGGTGACGCATGTTGGACCTGCGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGA 70067 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 | |||||||||| || | || | | | || ||||| | Sbjct 70068 TCTTGTTCAAGTTCTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGA 70127 Query 22992 C------GCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 | | | | | | ||| || || |||||||||||||| ||||| |||| Sbjct 70128 TTTTGGTGACGGGGT---CGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTTGCAGACGG 70184 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | |||||||| || ||||||| | || ||||| || || ||| ||||| || | Sbjct 70185 CGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATGG 70244 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||| | || |||||||||| || |||||| | ||||||||||| ||| | || Sbjct 70245 TGCCAAGGTTCTTCTGGTTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGT 70304 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 | || |||||| ||||||||||| ||| || ||| | |||| || | || | Sbjct 70305 TACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTGC 70364 Query 23226 GCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGTAA 23284 || | | | || || ||||||| | ||| | |||| ||||||||| | ||||| Sbjct 70365 GCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGACGC-TCAAATTCGTCGCCGTAG 70423 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 |||||||| || ||||| | | | || |||||||| ||| || | ||| Sbjct 70424 CAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTGCTCA 70483 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || | |||| || ||||| || | ||| || |||||||| || || ||||| |||||| Sbjct 70484 ACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACC 70543 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 ||||| || ||| |||||| || || | || || || || |||| ||||| ||| Sbjct 70544 TCCTCCTTTCCGTGGTTCTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGC 70603 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || | ||| | |||||| || || || | ||| || || ||||| |||||||| || ||| Sbjct 70604 TCAATGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACGTAGCGAGCC 70663 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG--GACGCGCCGCCTACGCCCG 23582 |||||||| | || | ||||| || |||| ||||||| ||||| || || | Sbjct 70664 GTGTTGTTAAAGACACGAAGCATGGGTACGATACCGTTGCTGACGCCATTGGTA--CCGG 70721 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | ||||| | | |||| | ||| | || || ||| ||||| ||| | | | Sbjct 70722 CAATGTAGGAACCGGTACCCCGAATGCAGTGGATGTTGAGACCAATGCCACCGGCGGTCT 70781 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| ||||| || ||||||||||| ||||| ||||| ||| || || Sbjct 70782 TGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTCCTTCA 70841 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | | ||| | ||||||||| || | || | | ||| ||| |||| ||| || || | Sbjct 70842 TGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAGGGTGG 70901 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 || ||||| |||||||| | |||||| || ||||| || |||||||| || | Sbjct 70902 GGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACTCTCGA 70961 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TC-TCGA 23879 |||||| ||||| ||||| | || || ||||| | ||||| || || | || ||| Sbjct 70962 TGTCCTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGTTCGGCGA 71021 Query 23880 CCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939 || | |||||| || || || || || || | | || || || ||||| | | Sbjct 71022 CCTT---GCCGTTGATACGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAAACCAAAGAAAT 71078 Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 |||| ||||| || |||| | |||||||| Sbjct 71079 TGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGA 71112 >seq180 Length=182808 Score = 159 bits (176), Expect = 3e-34 Identities = 378/567 (67%), Gaps = 17/567 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||||||||| || || ||||||| ||| || | ||||| Sbjct 15122 ATCTGGCAAATGTACAAAAAGGCAGAAGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 15063 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || || ||||||||| | ||||| || |||| | | || || Sbjct 15062 TCAAAAGACCTTCACGATTGGGACAACAAACTCAACGACAATGAGCGTCACTTCATCTCG 15003 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| ||||| ||||| || |||||||| | ||||| || Sbjct 15002 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTCGTCGAGCGA 14943 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || | | ||||| ||||||| ||||| ||||| | || Sbjct 14942 TTCAGCTCCGAGGTCCAGGCTGCCGAGGCCCGATGCTTCTACGGCTTTCAGATCATGATG 14883 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA----TACGTACGTGAAGGACAA 57862 || ||| | || || || | || ||||| |||||||| ||| | ||||| || Sbjct 14882 GAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCCGTGAGCCTGAA 14823 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | || || || || || |||| |||| || || |||| || ||||||| Sbjct 14822 CAGCGCGA---GT-TCCTCTTTGACGCCGTCGAGACCATTCCCGTAGTCAAGGAGAAGGC 14767 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCGAGAGGCTAAT 57979 || ||| | | ||||| |||| || | ||||| || ||||| | || | Sbjct 14766 TGACTGGGCCCTTCGCTGGAT---CAGCGACAAGCGCGCCACCTTTGCCGAACGTCTCGT 14710 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || || |||||||| ||||| ||||| || ||| || || | || || ||| | Sbjct 14709 TGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGCT 14650 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || || |||||||| || || || ||||||| | || || || || || Sbjct 14649 CAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGA 14590 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCT 58126 || || || || || ||||| || || Sbjct 14589 AGGCCTTCACACCGACTTTGCCTGTCT 14563 >seq55 Length=29365 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || ||||| || |||||| |||| || || | ||| Sbjct 16441 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCTCC 16382 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || ||||||||| Sbjct 16381 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 16322 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || || || || ||||| ||| | || || | | | ||| | ||| || || Sbjct 16321 CAGCGACTCATCTTTGCAGGCAAGCAGCTCGAGGA-TGGACGCACTCTCTCCGACTACAA 16263 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || || || || || || ||| | || | || |||| Sbjct 16262 CATTCAGAAGGAGTCTACCCTCCACCTTGTGCTTCGTCTCCGTGGTGGTA 16213 >seq112 Length=308905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||||||||| || || || || ||| | || || || | || Sbjct 97226 ATGCAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97167 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| || | || ||||||||| Sbjct 97166 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 97107 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | || ||| || | || || ||| Sbjct 97106 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97047 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || ||||| || || ||| |||| | || |||| Sbjct 97046 ATCCAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTCCGTGGTGGTA 96998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765034840400