Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq241 145 1e-29 seq180 109 7e-19 >seq241 Length=120793 Score = 145 bits (160), Expect = 1e-29 Identities = 444/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | |||||| || |||| | || || | ||||| |||||||| || | | Sbjct 70451 GGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGGACC 70510 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || || || |||| | | ||||| ||||| ||||| || Sbjct 70511 CAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTTCTTACGCAGG 70570 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||| || ||||| || || | ||| ||||| | | ||||| Sbjct 70571 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCAGGA 70630 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | ||| ||||| ||| | || | | ||| || Sbjct 70631 CGCTTGTTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGT 70690 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| | ||||||||||||| || ||| || | | ||||| | Sbjct 70691 ACGATACCGTTGCTGACGCCATTGGTACCGGCAATGTAGGAACCGGTACCCCGAAT-GCA 70749 Query 63534 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | || | ||||| || || || || | || ||||| | ||||| || | || Sbjct 70750 GTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGT 70809 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA--GCTAGA-CAT 63649 ||| || ||||| || || || || ||||| | | || ||||| | ||| | Sbjct 70810 GTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTG 70869 Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 | |||| ||||| || || || || | ||| || |||||||| ||||| | |||| Sbjct 70870 TGGGTGGGGAGTA---CCGGCGTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTG 70926 Query 63710 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63769 || | || ||||| ||||| || || || || ||| || || || || || Sbjct 70927 CGACATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTCCTGGCCGTGGATACCAACAGC 70986 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 |||||||| | ||||||||| || | ||| | | ||| ||| || | | ||| Sbjct 70987 AACACGCATGAGCATGTGCTGGGGACGTTCGGCGACCTTGCCGTTGATACGGAGGAGGTA 71046 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| || | || || |||||||| | ||||| ||||| || ||||| || || Sbjct 71047 GGAGCGCTCGAGGGTCTTGAAACCAAAGAAATTGTAGTGGAAGTCGCGCTCGTAGATGAT 71106 Query 63890 AACCGAATTGAGCTTATCCTT 63910 |||| | ||||| |||||| Sbjct 71107 GGCCGAGTCGAGCTGATCCTT 71127 >seq180 Length=182808 Score = 109 bits (120), Expect = 7e-19 Identities = 342/525 (65%), Gaps = 11/525 (2%) Strand=Plus/Plus Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 ||||| || || ||||| |||||||| || |||||||| || ||||| || ||||| ||| Sbjct 14608 TCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCG 14667 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || || || || |||||||| || || || ||||||||||||| || | || || | Sbjct 14668 AACGAGCCAGAGAAGAAGATACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAG 14727 Query 33744 CCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 ||||| |||| ||||| | ||||| || ||||||| || || || Sbjct 14728 GTGGCGCGCTTGTCGCTGATCCAGCGAAGGGCCCAGTCAGCCTTCTCCTTGACTACGGGA 14787 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 || || || | ||| | |||||| | | | | | || | || || ||| Sbjct 14788 ATGGTCTCGACGGCGTCAAAGAGGAACTCGCGCTGTTCAGGCTCACGGATGTAGGTGTCG 14847 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | || || | || || || ||||| || || |||||||| |||||||| Sbjct 14848 ATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAG 14907 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33980 |||| ||||||| | ||| || || | | ||||| || | | || || || || Sbjct 14908 CATCGGGCCTCGGCAGCCTGGACCTCGGAGCTGAATCGCTCGACGAGGTTCTCGTTGACG 14967 Query 33981 ATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 34040 || || || ||| || || || || | || || || || | || | || Sbjct 14968 ATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCAT-TGTC 15026 Query 34041 GTT-AGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 34096 ||| ||||| || |||||| | | ||||| || | || | || || | ||||| Sbjct 15027 GTTGAGTTTGTTGTCCCAATCGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCGGTCCA 15086 Query 34097 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT---GTCATG 34138 || || || ||||||||||| ||||| | |||||| |||||| Sbjct 15087 GAAGGAAGCTTCTGCCTTTTTGTACATTTGCCAGATCTGGTCATG 15131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815671183600