Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq112 120 3e-22 seq55 102 8e-17 >seq112 Length=308905 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | |||||| || | ||||| || ||||| || || ||||| |||||||| Sbjct 96315 GCCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCT 96374 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | || |||||||| ||||||||| |||||| || ||||| |||||||| Sbjct 96375 CAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGG 96434 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || || || || || ||| | || | || | | || || | || | | ||| | Sbjct 96435 GATACCCTCCTTATCC-TGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGA 96493 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| || | |||||| ||||||||||| || || || || |||||| Sbjct 96494 CCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCATA 96543 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| ||| ||||| || || ||||| || |||||| Sbjct 96544 CCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 96603 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| ||||||||| |||||| || |||||||||||||| Sbjct 96604 AGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGG 96663 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | || | ||||| | | ||| || Sbjct 96664 ATACCCTCCTTATC-CTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAAC 96722 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||| || || | || || || || ||||||||| Sbjct 96723 CTCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATA 96771 >seq55 Length=29365 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 |||||||| || |||||||| || ||| | |||| || | || |||||||| || || Sbjct 16245 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCA-TCCTCGAGCTGCTTGCC 16303 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||| || || ||||| ||||| || |||||||| ||||| ||| || || Sbjct 16304 TGCAAAGATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 16363 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| || ||| ||||| | ||| | ||||||||||| | || Sbjct 16364 GACGTTGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGT 16423 Query 139747 TTTTACGAATATTTGCAT 139764 ||||| || || ||||| Sbjct 16424 CTTTACAAAGATCTGCAT 16441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062480804000