Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq180 131 2e-25 >seq180 Length=182808 Score = 131 bits (144), Expect = 2e-25 Identities = 348/530 (66%), Gaps = 9/530 (2%) Strand=Plus/Plus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || || |||||||| || ||||| |||||||| || |||||||| || ||||| || ||| Sbjct 14602 ATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATG 14661 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || || || || ||||| |||||||| || || || || ||||||||||| || | || Sbjct 14662 GAGGCGAACGAGCCAGAGAAGAAGATACCCTCGACGGCAGCAAAGGCAACGAGACGTTCG 14721 Query 50116 CCATAACTGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 50172 || | |||||| |||| ||||| | ||||| || ||||||| || || Sbjct 14722 GCAAAGGTGGCGCGCTTGTCGCTGATCCAGCGAAGGGCCCAGTCAGCCTTCTCCTTGACT 14781 Query 50173 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 50232 || || || || | ||| | |||||| | | | | | || | || Sbjct 14782 ACGGGAATGGTCTCGACGGCGTCAAAGAGGAACTCGCGCTGTTCAGGCTCACGGATGTAG 14841 Query 50233 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 50292 || ||||| | || || | || || || ||||| || || |||||||| ||| Sbjct 14842 GTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCG 14901 Query 50293 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCA 50352 ||||| |||| ||||||| | ||| || || | | ||||| || | | || || Sbjct 14902 TAGAAGCATCGGGCCTCGGCAGCCTGGACCTCGGAGCTGAATCGCTCGACGAGGTTCTCG 14961 Query 50353 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG 50412 || || || ||||| ||| || || || || | || || || || || || Sbjct 14962 TTGACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCA 15021 Query 50413 TTGGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 ||| | ||||| || |||||| | | ||||| || | || | || || | Sbjct 15022 TTGTCGTTGAGTTTGTTGTCCCAATCGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCG 15081 Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT---GTCATG 50516 ||||| || || || ||||||||||| ||||| | |||||| |||||| Sbjct 15082 GTCCAGAAGGAAGCTTCTGCCTTTTTGTACATTTGCCAGATCTGGTCATG 15131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266600301800