Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq112 86.0 5e-12 >seq112 Length=308905 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 42874 CAATC-GTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATT 42932 ||||| || ||| |||||||| | || || | || | || |||||| || | || Sbjct 96306 CAATCAGTTGCCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTT 96365 Query 42933 GTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTG 42992 ||||||| || ||||| | || || | || || || ||||| ||||||||||| || Sbjct 96366 GTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTG 96425 Query 42993 ATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGC 43051 |||| || | ||| || || || ||| ||| | ||||| || ||| || || Sbjct 96426 GTCGGGAGGGATACCCTCCTTATC-CTGAATCTTGGCCTTGACATTGTCAATGGTATCAG 96484 Query 43052 CAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||||| || | ||| || || || ||||| | || || |||||||| ||||| Sbjct 96485 AAGACTCGACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368461254210