Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq180 214 3e-50 seq241 156 6e-33 seq1 86.0 9e-12 >seq180 Length=182808 Score = 214 bits (236), Expect = 3e-50 Identities = 507/752 (67%), Gaps = 28/752 (4%) Strand=Plus/Minus Query 125013 CATGAC---ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 |||||| || ||| |||||||||||||||| | || ||||| ||||| | ||| ||| Sbjct 15131 CATGACCAGATCTGGCAAATGTACAAAAAGGCAGAAGCTTCCTTCTGGACCGCCGAGGAG 15072 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 |||| || || || ||||| |||||||||| | | | || | |||||| | Sbjct 15071 ATCGACCTCTCAAAAGACCTTCACGATTGGGACAACAAACTCAACGACAATGAGCGTCAC 15012 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT- 125188 || || |||||| | | |||||||| |||| |||||| || ||||||||||| || || Sbjct 15011 TTCATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTC 14952 Query 125189 GTTGACACGATTCT-CTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATT 125245 || || |||||| ||| ||| | ||| | | |||| ||||| ||||| || Sbjct 14951 GTCGAG-CGATTCAGCTCC-GAGGT--CCAGGCTGCCGAGGCCCGATGCTTCTACGGCTT 14896 Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||||| |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 14895 TCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACAT 14836 Query 125306 TCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATAC 125364 || || || ||| | | |||||| |||| |||| || | || || | Sbjct 14835 CCGTGAGCCTGAACAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATTCCCGTAGTCAA 14776 Query 125365 GTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTACGCCG 125421 | | || |||| | |||| |||| |||||| ||||||| | | | |||| Sbjct 14775 GGAGAA-GGCTGACTGGGCCCTTCGCTGGATCAG---CGACAAGCGCGCCACCTTTGCCG 14720 Query 125422 ACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCA 125481 | | || || || || || ||||| ||||| |||||||| || || || || ||| Sbjct 14719 AACGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCA 14660 Query 125482 TCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATAT 125541 |||| |||||||||||||| || ||||||||||| || || | |||||| | || | Sbjct 14659 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCT 14600 Query 125542 CTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTC 125601 | || || || ||||| ||| ||||||||| ||| || || || | |||| | Sbjct 14599 CCCGTGATGAAGGCCTTCACACCGACTTTGCCTGTCTCCTCTT---CAGCCATCT-CAAG 14544 Query 125602 CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAG 125661 | | ||| | || || | || | | || | ||||| ||||| || | Sbjct 14543 AAGCGCGCACACCC-----CGACACCGTTCTGAGTATCATTACCGAGGCCGTCTCCATCG 14489 Query 125662 AACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721 ||||| || | ||||| |||| || || || |||| ||||||||| ||||| | Sbjct 14488 AACAACGCTTCTTGACCGATGCCCTGCCCGTTAGTTTGATCGGCATGAACGCAAAGCTCA 14429 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753 ||||| ||||| |||| ||| || |||||| Sbjct 14428 TGTGCACATACATTGAGTATGTCGCCGATCGT 14397 >seq241 Length=120793 Score = 156 bits (172), Expect = 6e-33 Identities = 337/500 (67%), Gaps = 8/500 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| ||||| | || ||||||||| |||| Sbjct 70647 CAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGAT 70588 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| |||| || ||| || || |||| || ||| | || Sbjct 70587 GTCTTTGAGTTCCTCGACCTGCGTAAGAACCACGGAAAGGAGGAGGTGCGTGCCCGAGAG 70528 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA---CGGTGGC 97052 | || || || |||||||| || ||| | ||||||||| | || | | ||||| Sbjct 70527 CTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTTGAGCAGAACGGTG-- 70470 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 ||||| || ||||||||| || || |||||||| |||| |||| ||||| || Sbjct 70469 -ACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTGCTACGGCGACGAA 70411 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 |||||| ||| | ||||||| ||||| || | | | | ||| | || Sbjct 70410 TTTGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAAGCGCACCGTCAAGGCC 70351 Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| || ||| | |||||| | | | ||| ||||| || | || | ||| || Sbjct 70350 C-AGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCTTCATCCT 70292 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||||||| | | |||||||| |||||||| || | |||||||||||| |||| Sbjct 70291 CTACAAGGACGCTGCCAATCGCAAGAGCAACCAGAAGAACCTTGGCACCATCAAGTGCTC 70232 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351 ||| || ||||| || || | |||||| | || |||||| || || ||| || Sbjct 70231 CAACCTCTGCACCGAGATCATCGAGTACAGTGCCCCCGACGAGGTCGCCGTCTGCAACCT 70172 Query 97352 GGCATCGGTCAATCTGCCCA 97371 || ||| || ||| |||| Sbjct 70171 TGCCTCGATCGCTCTCCCCA 70152 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACC-AAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||| || |||||||| | | | ||| | | || || |||||||||||| || Sbjct 69470 TCTACAAGACCGTATGGGAGAT-CAGCCAGAAGGCCATCATTGACATGGCTGCCGACCGA 69412 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| | ||| |||| ||| ||| |||| | || || | | ||||||| | || Sbjct 69411 GGTGCATTCATCTGCCAGTCTCAGTCGCTCAACATCCACCTTTCAGCTCCCACCTTCGGT 69352 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | | || ||||| |||||||||| ||||| ||||| |||||||| || | ||||| Sbjct 69351 CAGCTCACCTCGATGCACTTTTACGGTTGGAAGAAGGGGCTCAAGACTGGAACTTACTAC 69292 Query 98217 CTGAGAACAAAGTCGGCCACCAATGCCATACCATTTAC 98254 || | || ||| | || ||| || || | ||||| Sbjct 69291 CTCCGTACCAAGCCCGCGTCCAGCGCTATTCAGTTTAC 69254 >seq1 Length=364348 Score = 86.0 bits (94), Expect = 9e-12 Identities = 173/254 (68%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || ||||| || || ||| ||| | || |||||||| | | || || | Sbjct 323982 CCGTGGGTAAGGTGACCACCCGAGGGGAGACCAAGACCCATGATACGGTCCTGAGGCTGG 323923 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | | | ||| | |||||||||||| | ||||| ||||| || || ||| || Sbjct 323922 AGAAGAGCGGTGAAGGTGGCAAAGTTGGCAGTGGAGCCAGAGTAAGGCTGGACATTGACG 323863 Query 127567 CCCCATTCGGACTC--GTTCAAA-TTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 ||||| | || | |||| ||||| || ||||| |||||||| || | Sbjct 323862 CCCCAGAC---CTTAGGGTCAAGGTTGAAAGCCTTGAGAGCACGCTGCTGGCAAAGAACC 323806 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 |||| | ||||| ||||||||||||| |||||||| ||||| |||||| ||| Sbjct 323805 TCGAGCTGGTCGATGTACTCGTTACCACCGTAGTATCGGGCACCGGGAAGACCCTCGGAG 323746 Query 127684 TACTTGTTGATGAG 127697 ||||||||| |||| Sbjct 323745 TACTTGTTGGTGAG 323732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056930506200