Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq112 145 2e-29 seq55 143 6e-29 seq8 91.5 3e-13 >seq112 Length=308905 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| || || ||||| || || |||| ||||| Sbjct 97242 AAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTC 97301 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||||||||| | | ||| || || ||||| || || || ||||| Sbjct 97302 CTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATC 97361 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | |||||| || || ||||| || ||||| || Sbjct 97362 CTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGT 97421 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || ||||| || |||||||| Sbjct 97422 CTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| || || ||||| || || |||| ||||| Sbjct 97014 AAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTC 97073 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || || ||||| || || || || || Sbjct 97074 CTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTC 97133 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | |||||| || || ||||| || ||||| || Sbjct 97134 CTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGT 97193 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || ||||| || |||||||| Sbjct 97194 CTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || |||||||| ||||| | || ||||| || || ||||| || ||| Sbjct 96808 TCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAA 96867 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || ||||| || || || || |||||||||||||| || || ||||| Sbjct 96868 ATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTG 96927 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || || || | || || ||||| || || || || || ||| Sbjct 96928 TCAATGGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 96987 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 96988 AAGATCTGCAT 96998 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| ||||| | |||||||| || || || ||| Sbjct 96574 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCA 96633 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| ||||| ||||| || || || |||||||||||||| || || Sbjct 96634 GCAAAGATCAATCGCTGCTGATCGGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTG 96693 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || ||||| | || || ||||| || || ||||| Sbjct 96694 ACATTGTCGATCGTGTCCGAAGACTCAACCTCCAAAGTGATCGTCTTTCCTGTGAGTGTC 96753 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 96754 TTGACAAAGATTTGCAT 96770 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || || | ||| || || ||||| || || || || || || | || || || Sbjct 96334 ACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCG 96393 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || | | ||| || || ||||| || || || ||||||||| Sbjct 96394 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGA 96453 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | |||||| || || ||||| || || || |||||| Sbjct 96454 ATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGTCTTA 96513 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| |||||||| Sbjct 96514 CCGGTCAACGTCTTGACAAAAATCTGCAT 96542 >seq55 Length=29365 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || ||||| || ||||||| ||||| Sbjct 16002 AGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCC 16061 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| || ||||| || | ||| |||||||| || || ||||| || ||| Sbjct 16062 TCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCC 16121 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | ||| || | ||| || ||||| || || || || Sbjct 16122 TGAATCTTGGCCTTGACATTATCGATGGTGTC-CGAGGACTCGACCTCAAGAGTGATGGT 16180 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || | || || ||||| |||||||| Sbjct 16181 CTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 >seq8 Length=117649 Score = 91.5 bits (100), Expect = 3e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 82439 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCG 82380 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||||||||| || || Sbjct 82379 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTG 82320 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | ||| || | ||| || ||||| || ||||| |||||||| || Sbjct 82319 ACATTGTCGATGGTGTC-CGAGGACTCCACCTCAAGGGTAATGGTCTTACCTGT 82267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394785688460