Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq55 102 7e-17 seq112 100 2e-16 seq199 98.7 8e-16 >seq55 Length=29365 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || |||||||| || | | ||| ||||||| ||||| Sbjct 16010 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCGAGCTG 16069 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| | |||||||||||| || | | |||||||||| ||| || Sbjct 16070 CTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGAATCTT 16129 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | ||||| ||| | || ||||| |||||||| Sbjct 16130 GGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTACCGGT 16189 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| || ||||| |||||||| Sbjct 16190 CAAAGTCTTGACAAAGATCTGCAT 16213 >seq112 Length=308905 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || | | ||| ||||||| |||||| Sbjct 97024 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGC 97083 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || | ||||||||| || || | || ||||||||| ||| || Sbjct 97084 TTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTG 97143 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | |||||||| | |||||| ||| | || ||||| |||||||| Sbjct 97144 GCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTC 97203 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 97204 AGAGTCTTTACGAAAATCTGCAT 97226 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || | | ||| ||||||| |||||| Sbjct 97252 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGC 97311 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | |||| || |||||||| || || | || ||||| ||| ||| || Sbjct 97312 TTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTG 97371 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | |||||||| | |||||| ||| | || ||||| |||||||| Sbjct 97372 GCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTC 97431 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| Sbjct 97432 AGAGTCTTTACGAAGATCTGCAT 97454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || |||||||| || ||||||||||| |||| || | || || | || || ||||| Sbjct 96796 TGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGACAGAGTG-CGGCCATCTTCGAGCTG 96854 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| | |||||||| || || | | ||||| ||| ||| || Sbjct 96855 CTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGAATCTT 96914 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | |||||| || | || ||||| || ||||| Sbjct 96915 GGCCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTGCCGGT 96974 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || ||||| |||||||| Sbjct 96975 GAGGGTCTTGACAAAGATCTGCAT 96998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 |||||||| |||||| || ||||||||||| || | || || | ||||| ||||| Sbjct 96340 TGAAGTGTCGACTCCTTCTGGATGTTGTAATC-GCTCAGCGTACGGCCATCCTCGAGCTG 96398 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || || |||||||| || || | || ||||| ||| ||| || Sbjct 96399 CTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTT 96458 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | |||||| ||| | || || || |||||||| Sbjct 96459 GGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGTCTTACCGGT 96518 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || || |||||||||||||| Sbjct 96519 CAACGTCTTGACAAAAATCTGCAT 96542 >seq199 Length=93844 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || | || || || ||||||| ||||| Sbjct 53683 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCGAGCTG 53741 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | |||||||| || || | | ||||||||| || || Sbjct 53742 CTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTT 53801 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | ||||| |||| ||||||| ||||| || ||||| ||||| || Sbjct 53802 GGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGT 53861 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || |||||||| ||||||||| || Sbjct 53862 AAGGGTCTTCACAAAGATCTGCATCTTG 53889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249942170245