Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq174 156 7e-34 >seq174 Length=292904 Score = 156 bits (172), Expect = 7e-34 Identities = 183/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||| ||||| || || Sbjct 85227 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCGCG 85285 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||| ||||| ||||||||| ||||||| | |||| || |||| || | ||| | || Sbjct 85286 TCGAGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGACGAGACCCGCGGTGTCCTCAA 85345 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | ||||||| || | || |||| || | || ||| || |||||||| || || || Sbjct 85346 GCTCTTCCTTGAGTCGGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCAAGCGCAA 85405 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 |||||||||||| | || | ||||| || | || || || ||||| | |||| || Sbjct 85406 GACTGTCACCTCGCTCGACGTTGTCTACGCTCTCAAGCGCCAGGGCCGCACCCTTTACGG 85465 Query 16687 TTTTGG 16692 ||| || Sbjct 85466 TTTCGG 85471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074975994785