Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq241 149 8e-31 seq180 123 3e-23 >seq241 Length=120793 Score = 149 bits (164), Expect = 8e-31 Identities = 445/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Plus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | |||||| || |||| | || || | ||||| |||||||| || | | Sbjct 70451 GGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGGACC 70510 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || || || || || |||| || | ||||| ||||| ||||| || Sbjct 70511 CAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTTCTTACGCAGG 70570 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 ||||||||| | | | ||| || ||||| || || | ||| ||||| | | ||||| Sbjct 70571 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCAGGA 70630 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || ||||| || | ||| | ||| ||||| ||| | || | | ||| || Sbjct 70631 CGCTTGTTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGT 70690 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | |||||||| | ||||||||||||| || ||| || | | ||||| | Sbjct 70691 ACGATACCGTTGCTGACGCCATTGGTACCGGCAATGTAGGAACCGGTACCCCGAAT-GCA 70749 Query 63483 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 | || | ||||| || || || || | || ||||| | ||||| || | || Sbjct 70750 GTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGT 70809 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA--GCTAGA-CAT 63598 ||| || || || || || || || ||||| | | || ||||| | ||| | Sbjct 70810 GTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTG 70869 Query 63599 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 | |||| | ||| || || || || | ||| || |||||||| ||||| | |||| Sbjct 70870 TGGGTGGGG---AGTACCGGCGTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTG 70926 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 || | || ||||| ||||| || || || || ||| || || || || || Sbjct 70927 CGACATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTCCTGGCCGTGGATACCAACAGC 70986 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 |||||||| | ||||||||| || | ||| ||| |||| ||| || | | ||| Sbjct 70987 AACACGCATGAGCATGTGCTGGGGACGTTCGGCGACCTTGCCGTTGATACGGAGGAGGTA 71046 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||| || | || || |||||||| | ||||| ||||| || ||||| || || Sbjct 71047 GGAGCGCTCGAGGGTCTTGAAACCAAAGAAATTGTAGTGGAAGTCGCGCTCGTAGATGAT 71106 Query 63839 AACCGAGTTGAGTTTATCCTT 63859 |||||| ||| | |||||| Sbjct 71107 GGCCGAGTCGAGCTGATCCTT 71127 >seq180 Length=182808 Score = 123 bits (136), Expect = 3e-23 Identities = 343/522 (66%), Gaps = 8/522 (2%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || |||||||| || ||||| |||||||| || |||||||| || ||||| || ||| Sbjct 14602 ATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATG 14661 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || ||||| || ||||| |||||||| || || || ||||||||||||| || | || Sbjct 14662 GAGGCGAACGAGCCAGAGAAGAAGATACCCTCGACGGCAGCAAAGGCAACGAGACGTTCG 14721 Query 33460 CCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516 || | ||||| |||| ||||| | ||||| || ||||||| || || Sbjct 14722 GCAAAGGTGGCGCGCTTGTCGCTGATCCAGCGAAGGGCCCAGTCAGCCTTCTCCTTGACT 14781 Query 33517 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33576 || || || || | ||| | |||||| | | | | | || | || Sbjct 14782 ACGGGAATGGTCTCGACGGCGTCAAAGAGGAACTCGCGCTGTTCAGGCTCACGGATGTAG 14841 Query 33577 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33636 || ||||| | || || | || || || ||||| || || |||||||| ||| Sbjct 14842 GTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCG 14901 Query 33637 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCA 33696 ||||| |||| ||||||| | ||| || || | | ||||| || | | || || Sbjct 14902 TAGAAGCATCGGGCCTCGGCAGCCTGGACCTCGGAGCTGAATCGCTCGACGAGGTTCTCG 14961 Query 33697 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33756 || || || ||||| ||| || || || || | || || || || | || Sbjct 14962 TTGACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCA 15021 Query 33757 TCTGGTGTT-AGTTTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 33812 | || ||| ||||| || |||||| | | ||||| || | || | || || | Sbjct 15022 T-TGTCGTTGAGTTTGTTGTCCCAATCGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGC 15080 Query 33813 TGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 ||||| || || || ||||||||||| ||||| | |||||| Sbjct 15081 GGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATTTGCCAGAT 15122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945292224200