Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq241 342 1e-88 >seq241 Length=120793 Score = 342 bits (378), Expect = 1e-88 Identities = 1150/1767 (65%), Gaps = 44/1767 (2%) Strand=Plus/Minus Query 363415 TCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGT 363474 |||||||| |||||||| || | | | ||||| || ||||| ||| | |||||| Sbjct 71049 TCCTACCTCCTCCGTATCAACGGCAAGGTCGCCGAACGTCCCCAGCACATGCTCATGCGT 70990 Query 363475 GTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA 363534 |||||| |||||||||| ||| ||| | || || || || || || || || | Sbjct 70989 GTTGCTGTTGGTATCCACGGCCAGGACATCGAGAGTGCCATCGAGACCTACAACCTCAT- 70931 Query 363535 AGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATC 363592 || || ||| || || ||||| | || || | | ||| || || |||| | | Sbjct 70930 -GTCGCAAAAGTACTTTACCCACGCTTCCCCCACCCTCTTCAACGCCGGTACTCCCCACC 70872 Query 363593 CACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTG 363652 ||||| | || || || || || | | ||||||||||| || ||||| || || | | Sbjct 70871 CACAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGACTCGATCGACGGCATTTACG 70812 Query 363653 ACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCC 363712 |||| || |||| || || | || ||||||| || || || |||||| | |||| Sbjct 70811 ACACTCTCAAGACCTGCGCCATGATCTCCAAGACCGCCGGTGGCATTGGTCTCAACATCC 70752 Query 363713 ACAATGTTCGTGCACAGAACAGTT---ACATTCGCGGCACAGGGGGATACTCGAATGGGC 363769 || |||| | | | ||| ||||| ||| || || | || || Sbjct 70751 ACTGCATTCGGGGT---ACCGGTTCCTACATTGCCGGTACCAATGGCGTCAGCAACGGTA 70695 Query 363770 TGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAA 363829 | || |||||||||||||| ||| |||| || || | ||||||||||||||||| | Sbjct 70694 TCGTACCCATGCTTCGTGTCTTTAACAACACGGCTCGCTACGTCGACCAGGGTGGTAACA 70635 Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 |||| || || ||||| || || | |||||| || | ||| | |||||||| | Sbjct 70634 AGCGTCCTGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGATGTCTTTGAGTTCC 70575 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 | || || || || ||| ||||| ||||| ||||||| || || || ||||| || | Sbjct 70574 TCGACCTGCGTAAGAACCACGGAAAGGAGGAGGTGCGTGCCCGAGAGCTCTTCTACGCCC 70515 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG-AATTGGTCACTCTTT 364008 | ||||| | || | || |||||| | || || |||| | | ||||| ||| | Sbjct 70514 TCTGGGTCCCCGATCTCTTCATGAAGAGGGTTGA-GCAGAACGGTGACTGGTCGCTCATG 70456 Query 364009 TGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 ||||| |||| || || ||||| |||| | || ||||| | || ||| ||| Sbjct 70455 TGCCCCAACGAGTGCCCCGGTCTCGCCGACTGCTACGGCGACGAATTTGAGCGTCTCTAC 70396 Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG---ACAATTCCCGCACAGAAGCTATGG 364125 || || || | ||||| |||| ||| || | || |||||||| ||| Sbjct 70395 GAGCGCTACGAGGCCGAGGG--TCGCTC-CAAGCGCACCGTCAAGGCCCAGAAGCTCTGG 70339 Query 364126 TTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCG 364185 | |||||| | || ||||||| ||||| || | |||| || | ||||| || | Sbjct 70338 TACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCTTCATCCTCTACAAGGACGCT 70279 Query 364186 TGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACC 364245 ||| |||||| ||||||| || ||||||| || || || |||||| || ||| Sbjct 70278 GCCAATCGCAAGAGCAACCAGAAGAACCTTGGCACCATCAAGTGCTCCAACCTCTGCACC 70219 Query 364246 GAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCG 364305 ||||| || || |||| || ||||||||| ||||| || |||||||| |||||||| Sbjct 70218 GAGATCATCGAGTACAGTGCCCCCGACGAGGTCGCCGTCTGCAACCTTGCCTCGATCGCT 70159 Query 364306 CTTCCGGCGTTTGTAAAAGATGGTAC------TTTTGACCACCAGCATCTTTATGACGTA 364359 || || | ||| | | | || | || | ||| ||| | || || Sbjct 70158 CTCCCCACCTTTATCGACCCCGTCACCAAAATCTACGATTTCAAGCGTCTCCACGAGGTC 70099 Query 364360 ACCTATCATGCTACTTGCA--ATCTCG-ACAAGGTTATCGACAAGAATTATTATCCAATT 364416 || | || | |||| | || | ||||| | ||||||| || || ||||| | Sbjct 70098 GCC---AAGGCCATCTGCAAGAACTTGAACAAGATCATCGACATCAACTACTATCC-CGT 70043 Query 364417 CCTGAAGCCGAGC-GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCT 364475 | | || | || | || || |||||||| || || || ||| | ||||| ||||| || Sbjct 70042 CGAGGAGGCTCGCAGGTCCAACATGCGTCACCGTCCCATCGGTATCGGTGTCCAGGGTCT 69983 Query 364476 CGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAA 364535 |||||||| || ||||| | || ||||| ||||| || |||||| ||| || Sbjct 69982 CGCTGACGCCTTCATGATCATGGGCTACGCCTTTGAGTCGCCCGAGGCTCGTCGTCTTAA 69923 Query 364536 TAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAA 364594 | |||||||||| || || || ||||| | || | ||||| || |||| Sbjct 69922 TGTTCAGATCTTTGAGACCATCTACCACGCCGCCCTCGAGCG-ATCGTGCGAGCTGGCTC 69864 Query 364595 AAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGT 364654 | | || | ||| || |||| || || || ||||||||| | | |||| Sbjct 69863 AGGAGCACGGCACCTACGAGACCTATGCCGGCTCGCCCGCTTCGCAGGGTGAGCTTCAGT 69804 Query 364655 TTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACG 364714 || | ||| |||||| || || | || ||| |||||| || |||| Sbjct 69803 ACGACATGTGGGGTGTCACCCCTTCGGACCTCTGGGACTGGGCCGGCCTCAAGGCCAAGA 69744 Query 364715 TTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTG 364774 || ||||| ||| ||||| || ||| | || || ||||| || || ||||| Sbjct 69743 TTGCCAAGCACGGTCTGCGCAATTCGCTCCTCCTCGCCCCGATGCCTACCGCCTCTACAA 69684 Query 364775 CACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCC 364834 ||||| ||||| |||||||||||| ||||| | || ||| |||| || || | Sbjct 69683 GTCAGATTCTCGGTTTCAACGAGTGCTTTGAACCTTACACTTCCAACATTTACTCTCGTC 69624 Query 364835 GGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACC 364894 | || || |||| || || | ||| || ||| | | || || || || | Sbjct 69623 GTGTACTCGCCGGCGAGTTCCAGGTGGTCAATCCCTGGTTGCTCCGCGAGCTCGTTGAGC 69564 Query 364895 GCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGA 364954 || ||||| |||| |||||||||| ||||| ||| |||||| | |||| Sbjct 69563 AAGGTTTGTGGAACGACACCATGAAGAACCGCATCATTGCCCACGGTGGTTCGATCCAGA 69504 Query 364955 ACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAAT-TTCC 365013 || |||| || | || || | | ||| | ||||| ||||||||||| || || Sbjct 69503 ACGTTCCCGGCATCCCCGACCGTATCAAGAAGCTCTACAAGACCGTATGGGAGATCAGCC 69444 Query 365014 ATGCGAA--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 | ||| | ||||||| ||||| ||||| || ||||| || ||||| ||| |||| Sbjct 69443 A---GAAGGCCATCATTGACATGGCTGCCGACCGAGGTGCATTCATCTGCCAGTCTCAGT 69387 Query 365072 CGTTTAACGTATTCATGACTCAG--CCAACCTCCGCCAAGCTTACATCCATGCATTTCTA 365129 || | ||| || || |||| || |||| || |||| || || ||||| || || Sbjct 69386 CGCTCAAC--ATCCACCTTTCAGCTCCCACCTTCGGTCAGCTCACCTCGATGCACTTTTA 69329 Query 365130 CGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| ||||| || || ||||| || Sbjct 69328 CGGTTGGAAGAAGGGGCTCAAGACTGG 69302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349508691590