Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq55 89.7 4e-13 seq180 87.8 2e-12 >seq55 Length=29365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | || || | || |||||| || Sbjct 16213 ATGCAGATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGTCCTCG 16154 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| |||||||| || || ||||| Sbjct 16153 GACACCATCGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGATCAG 16094 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || ||| ||||| ||||| || | ||| || || || ||| Sbjct 16093 CAGCGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTCTCGGACTACAAC 16034 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || ||||| ||||| Sbjct 16033 ATCCAGAAGGAGTCTACCCTTCAT 16010 >seq180 Length=182808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 105272 GCTCGATGATATTAGTGTTCACGATGACGTCGGCAGCGGCAAAAAACGCGAGAACGTGCT 105331 |||||| || || ||| ||||| |||||| ||||| || || ||||| |||||| Sbjct 14945 GCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCG 15004 Query 105332 TCAAAAAGAATCGTTCTTTATCGTTCAGTTTGTTGTTCCAATCGTCAAAGTCTTTGGACA 105391 | ||| || || || ||||| |||||||||| |||||||| || |||||| || | Sbjct 15005 AGATGAAGTGACGCTCATTGTCGTTGAGTTTGTTGTCCCAATCGTGAAGGTCTTTTGAGA 15064 Query 105392 TGTCGATTTCTTCAACTTTCCAATGACAATCGAGCGCCTTTTTGTACGATTGCCAAAGAT 105451 |||||| || || | |||| || | |||||||||||| ||||| |||| Sbjct 15065 GGTCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATTTGCC--AGAT 15122 Query 105452 CT 105453 || Sbjct 15123 CT 15124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934716237975