Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq175 93.3 5e-14 >seq175 Length=282811 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 15405 TGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGAT 15464 ||||||| |||||||| || || || || |||||||| | |||||||| ||| | ||| Sbjct 178651 TGGGACCTACGTACTACCAGCGTCTGAAGCACATGGTCGACGACAAGATCCACTCTCGAG 178710 Query 15465 CGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGC--GGTCGATCGCAAGGCGG 15522 | | || | |||| || | || ||||| | || ||||| |||| || || Sbjct 178711 CTCGAGGTCCGGTGCAGATTTTAACACGTCAGCC--AGTGGAAGGTCGTTCGCGTGGAGG 178768 Query 15523 TGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATT 15582 ||| || ||||| |||||||||||| || ||||| | | ||||| | || || Sbjct 178769 TGGTCTGCGCTTCGGAGAGATGGAACGAGATTGCATGATTGCACACGGTATCGCCGGCTT 178828 Query 15583 CCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 |||||| ||||| |||||| | ||||||| || ||| |||||||| Sbjct 178829 CCTCAAGGAGCGTATGTTTGACGTGTCGGACCCGTACCGCATTCACGTGTGC 178880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611390127612000