Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq55 113 4e-20 seq112 89.7 4e-13 >seq55 Length=29365 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | ||||| || | ||||| |||| || ||||| || Sbjct 16441 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCTCC 16382 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| |||||||| ||||| Sbjct 16381 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 16322 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| |||||| | ||| ||||| Sbjct 16321 CAGCGACTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACTCTCTCCGACTACAAC 16262 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 16261 ATTCAGAAGGAGTCTACCCTCCACCTTGTGCT 16230 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||||||||| ||||||| | || || ||||| || Sbjct 16213 ATGCAGATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGTCCTCG 16154 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | ||| ||||| ||||| ||||||||||| Sbjct 16153 GACACCATCGATAATGTCA---AGGCCAAGATTCA-GGACAAGGAAGGCATTCCACCTGA 16098 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | ||||| ||||| || || | || || | || ||| | || || Sbjct 16097 TCAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTCTCGGACTA 16038 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || ||| | || || Sbjct 16037 CAACATCCAGAAGGAGTCTACCCTTCATCTCGTCCT 16002 >seq112 Length=308905 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||||||| | ||||| | || || ||||| ||| Sbjct 96542 ATGCAGATTTTTGTCAAGACGTTGACCGGTAAGACGATCACGCTTGAGGTCGAGTCTTCT 96483 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| || || || || || || || ||| Sbjct 96482 GATACCATTGA--CAATGTCAAGGCCAAGATTCA-GGATAAGGAGGGTATCCCTCCCGAC 96426 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| || || || | || |||| || || || |||||||| Sbjct 96425 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTAC 96366 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || || Sbjct 96365 AACATCCAGAAGGAGTCGACACTTCA 96340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| |||||||||| |||| || | || || ||||| ||| Sbjct 97226 ATGCAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97167 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| ||||| || || || || || ||| Sbjct 97166 GATACCATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGTATCCCTCCCGAC 97110 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||||||||| || | || || | || || | || ||| Sbjct 97109 CAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTAC 97050 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || || ||||| || Sbjct 97049 AACATCCAGAAGGAGTCTACGCTTCA 97024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326706109675