Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq180 208 8e-49 >seq180 Length=182808 Score = 208 bits (230), Expect = 8e-49 Identities = 385/559 (69%), Gaps = 7/559 (1%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||||| || || || || | ||| ||| ||| || | | Sbjct 14566 CAGGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGA 14625 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || ||||||||||| || || || || || ||||| || || Sbjct 14626 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAG 14685 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 ||||| || ||||| ||||| || || | |||||||||||| | ||| || |||| Sbjct 14686 ATACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGGTGGCGCGCTTGTCGCTG 14745 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTT-AATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| | ||||| || || || | ||| | ||| || | || |||| |||| Sbjct 14746 ATCCAGCGAAGGGCCCAGTCAGCCTTCTCCTTGACTAC-GGGAATGGTCTCGACGGCGTC 14804 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| ||| | || |||| || | || || ||||| || ||||| | || || || | Sbjct 14805 AAAGAGGAACTCGCGCTGTTCAGGCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGT 14864 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || |||| |||||||| || || || |||||||| |||| || || | Sbjct 14865 CTCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCATCGGGCCTCGGCAGC 14924 Query 93451 CTGCACTTCTTGAG-AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| || || ||| |||| ||| ||||| || || ||||| ||||| ||||| || | Sbjct 14925 CTGGACCTC-GGAGCTGAATCGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCGG 14983 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCC 93566 | || || || | | ||| || || || ||||| || || || || |||| Sbjct 14984 CGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCATTGTCGTTGAGTTTGTTGTCCC 15043 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 ||||| || |||||||| || |||| || ||| | ||||| || || |||||||| | Sbjct 15044 AATCGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCTGCCT 15103 Query 93627 TTTTGTACATATCCCATAT 93645 |||||||||| | ||| || Sbjct 15104 TTTTGTACATTTGCCAGAT 15122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859094613800