Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq112 127 2e-24 seq55 118 9e-22 seq199 114 1e-20 seq8 109 5e-19 >seq112 Length=308905 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | |||||||| || | || ||||| || || | | Sbjct 97226 ATGCAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97167 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| |||||||||||||| || ||||| || Sbjct 97166 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 97107 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| || ||| |||| || |||||| Sbjct 97106 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97047 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| | ||| | || || ||| Sbjct 97046 ATCCAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTCCGTGGTGGT 96999 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || |||||||| ||| |||| ||||| || || | | Sbjct 96542 ATGCAGATTTTTGTCAAGACGTTGACCGGTAAGACGATCACGCTTGAGGTCGAGTCTTCT 96483 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| || ||||||||||| || ||||| || Sbjct 96482 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 96423 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | |||||| ||| || | |||||||||| Sbjct 96422 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTACAAC 96363 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || ||||| |||| || || Sbjct 96362 ATCCAGAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGTGGCGG 96316 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| | ||||| || | | Sbjct 96998 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCTTCT 96939 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| || |||||||| ||||| || || || Sbjct 96938 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAG 96879 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | || ||| |||||| | || || |||||| Sbjct 96878 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGTCTGACTACAAC 96819 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| |||| | || | || |||||| | ||||| ||| Sbjct 96818 ATTCAGAAAGAGAGCACCCTCCACCTCGTATTGCGACTTCGCGGTGGT 96771 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | |||||||| || | || ||||| || || | | Sbjct 97454 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97395 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| || ||||||||||| || ||||| || Sbjct 97394 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 97335 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | ||||| || ||| |||| || |||||| Sbjct 97334 CAGCGATTGATTTTTGCTGGTAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97275 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| | ||| | || || ||| Sbjct 97274 ATCCAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTCCGTGGTGGT 97227 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || ||| ||||| | || || || | | Sbjct 96770 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACGATCACTTTGGAGGTTGAGTCTTCG 96711 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| || ||||||||||| || |||||||| Sbjct 96710 GACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGATCAG 96651 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | || || |||||| | ||| |||||| Sbjct 96650 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGCGACTACAAC 96591 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 96590 ATCCAGAAGGAGTCGAC 96574 >seq55 Length=29365 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | ||||| || || |||| || || || || || Sbjct 16443 AGATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCT 16384 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| || | ||| | |||| || || || |||||||| || ||||||||||| | Sbjct 16383 CCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACC 16324 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || || || ||||| ||||| ||| | |||||| ||||| ||||||| |||| Sbjct 16323 AGCAGCGACTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACTCTCTCCGACTACA 16264 Query 22397 ACATTCAAAAAGAATCCACC 22416 ||||||| || || || ||| Sbjct 16263 ACATTCAGAAGGAGTCTACC 16244 >seq199 Length=93844 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | || ||||| || |||| || || ||||| | Sbjct 53888 AAGATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTCGAGGTGGAGTCT 53829 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 53828 TCCGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGAC 53769 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| || ||||| || ||| | ||||| ||||||| | || || ||| Sbjct 53768 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 53709 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 53708 AACATCCAGAAGGAGTCCACC 53688 >seq8 Length=117649 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301 ||| ||||| || | || ||||| ||||| || | || ||| | ||| || |||| Sbjct 82266 AACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGC 82325 Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 || ||||| |||||||||||||| || ||||| || || || || || || ||||| || Sbjct 82326 CAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 82385 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| |||| || |||||||| || || || || ||| Sbjct 82386 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 82440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726746718425