Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq241 114 3e-20 seq10 93.3 9e-14 >seq241 Length=120793 Score = 114 bits (126), Expect = 3e-20 Identities = 404/620 (65%), Gaps = 17/620 (3%) Strand=Plus/Plus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATA-GACTTCAGTGTGGG 293090 || || || ||||||||||| |||| || |||| || || | ||| || ||||| Sbjct 69305 GTCTTGAGCCCCTTCTTCCAACCGTAAAAGTGCATCGAGGTGAGCTGACCGAAG-GTGGG 69363 Query 293091 AGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGC 293150 || | ||| | ||| | ||| | ||| || || ||||| || || ||||| Sbjct 69364 AGCTGAAAGGTGGATGTTGAGCGACTGAGACTGGCAGATGAATGCACCTCGGTCGGCAGC 69423 Query 293151 GAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACA-- 293208 | |||||| | | |||| ||||||||| |||||||| | ||||| | Sbjct 69424 CATGTCAATGATGGCCTTCTGGCTGATCTCCCATACGGTCTTGTAGAGCTTCTTGATACG 69483 Query 293209 -TCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTT 293267 || || ||||| ||| |||||||| || || |||| |||||| || ||||||| Sbjct 69484 GTCGGGG---ATGCCGGGAACGTTCTGGATCGAACCACCGTGGGCAATGATGCGGTTCTT 69540 Query 293268 CATTGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAAC 293327 ||| || ||| ||| || | ||| ||||||||||| | | | ||||| || Sbjct 69541 CATGGTGTCGTTCCACAAACCTTGCTCAACGAGCTCGCGGAGCAACCAGGGATTGACCAC 69600 Query 293328 GGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGC 293387 ||||||| || ||||| ||||| ||||||||| |||||| ||||| Sbjct 69601 CTGGAACTCGCCGGCGAGTACACGACGAGAGTAAATGTTGGAAGTGTAAGGTTCAAAGCA 69660 Query 293388 CTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGC-AGTCGTCAGAG 293446 ||| | ||| ||||||| ||||| ||||||||||| | || || | || | Sbjct 69661 CTCGTTGAAACCGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAG-GAGCG 69719 Query 293447 AGTTCCTCACACCCTTCTTGACACGC---GATTCGAGACCCGCCCAGT-CCAGAGCAGTC 293502 | || | || ||| | |||| || | | | ||| || ||||||| |||||| ||| Sbjct 69720 AATTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGGCCGGCCCAGTCCCAGAG--GTC 69777 Query 293503 TG-AGGTGTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTC 293561 | ||| || |||||||| | | ||||| | ||||| || || || || | Sbjct 69778 CGAAGGGGTGACACCCCACATGTCGTACTGAAGCTCACCCTGCGAAGCGGGCGAGCCGGC 69837 Query 293562 AAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAA 293621 | |||| | || ||| ||||| | || |||||||| ||| ||| | || || Sbjct 69838 ATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGCTCGAGGGCGGCGTG 69897 Query 293622 GTAAATGTGCTCGAAGATCT 293641 ||| ||| ||| ||||||| Sbjct 69898 GTAGATGGTCTCAAAGATCT 69917 >seq10 Length=76520 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 |||||||| | |||||| || | ||| ||| ||||||||||| || || |||||| Sbjct 35040 GGTCTGGAGCGCGAGTTCACTTCGCACAACACCATGCGCGGTCTTTCCGGTGGTCAGAAG 34981 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| | ||| |||| || ||| |||| || || ||| | || || ||||||||| Sbjct 34980 GTCAAGGTCGTCCTCGGTGCCGCTACCTGGCGACGACCCCACATCATTGTCCTCGACGAG 34921 Query 280800 CCTACCAACTATCTGGACCGCGAG 280823 || ||||||| ||||||| ||| Sbjct 34920 CCCACCAACTTCTTGGACCGTGAG 34897 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| || |||||||||| ||||| |||| || | || || ||| || || Sbjct 35556 GGCCCCAACGGCTCGGGTAAGTCGACCCTGGTCAAGCTCGTCGTCGGTGACACCGAGCCC 35497 Query 280239 A-CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 || || | | |||||||| |||||| || || | ||||||||| |||||||| Sbjct 35496 GGCTCTGGTGAGA-TGTGGAAGCACCCCAACTTGGTCATTGGTTACGTCGCCCAGCACGC 35438 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 |||||||||||| || | ||||| |||| ||| ||| | | ||||| | ||||| || Sbjct 35437 TTTCCACCACATTGACCAGCACCTTGACAAGACCCCTCTCGACTACATGCTCTGGCGTTA 35378 Score = 84.2 bits (92), Expect = 4e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || ||||| | ||||||||||| || |||| |||||||| || ||| Sbjct 36387 GGCGAGGACCTTTGCAACTGTCAGTTCTCGCTCGCCTACGGTGCCAAGATTCTCCTCAAC 36328 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || ||| |||||||||| || ||| ||||| ||||| ||| || | Sbjct 36327 ACCGCCACCCTTCGTCTCAAGCGTGGTCACAAGTACGGTCTTTGCGGTCGCAACGGTTCC 36268 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCT 279518 |||||| || || ||||| || || | ||||||||| | || || || ||| Sbjct 36267 GGTAAGTCGACCCTCATGCGTGCAATCACCAACGGTCAGGTTGAGGGTTTCCCT 36214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833573556045