Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq112 197 3e-45 seq55 170 4e-37 seq8 123 5e-23 seq175 93.3 8e-14 seq10 87.8 3e-12 seq180 86.0 1e-11 >seq112 Length=308905 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| |||||||| | ||| || ||| |||||| || ||||| || || || Sbjct 96772 CCACCGCGAAGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGAC 96831 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| ||||||| || ||||| || ||| Sbjct 96832 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGA 96891 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || |||||||| |||||||| || ||||| || | || || ||| Sbjct 96892 ATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACT 96951 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || |||||||||||||| || |||||||| Sbjct 96952 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 >seq55 Length=29365 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || || ||||| || |||||| Sbjct 16215 CCACCACGGAGACGAAGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 16274 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || |||||||||||| Sbjct 16275 AGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGGA 16334 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||||| ||||| ||||| | || || || Sbjct 16335 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGACC 16394 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || ||||||||||| || || |||||||| Sbjct 16395 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 16441 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | || || || ||||| || |||||||| || || ||| Sbjct 15987 CCACCGCGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 16046 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || || || |||||| Sbjct 16047 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGA 16106 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 16107 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 16166 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || | |||||||| || |||||||| Sbjct 16167 TCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 >seq8 Length=117649 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || || ||| Sbjct 82469 CCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 82410 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 82409 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 82350 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 82349 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 82290 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || || || Sbjct 82289 TCAAGGGTAATGGTCTTACCTGT 82267 >seq175 Length=282811 Score = 93.3 bits (102), Expect = 8e-14 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| |||||||| | || |||| | || || || | ||| | |||||||| Sbjct 266936 TATCGCCAGGCGATGTACTCGACGGCGGTCTTCTCGAGATGCTGCTCCAAGTGGTGGAAG 266877 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || |||||||| | || || |||| |||||| |||||| ||| |||| ||| Sbjct 266876 GCGTGCTGGGCCATCATGGCAATACGCAAGTTGGGGTGCTTCTCCACCTTGCCC---GTC 266820 Query 225098 GGTTGTGCC---TCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | | | || |||||||| ||||||||||||||| |||| || ||||| ||||| Sbjct 266819 TGGGGCACAACTTCACCGGTGAGCACCTTGATGAGCGTACTCTTACCAGCACCGTTGGGA 266760 Query 225155 CCAATCACGCC 225165 |||| ||| || Sbjct 266759 CCAAGCACACC 266749 >seq10 Length=76520 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/185 (71%), Gaps = 12/185 (6%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||| | | |||||| |||| ||||| | ||||| ||||||||| Sbjct 35378 TAACGCCAGAGCATGTAGTCGAGAGGGGTCTTGTCAAGGTGCTGGTCAATGTGGTGGAAA 35437 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA------CAGAGCCC 225091 || |||||||| ||||| | ||| || |||||| |||||||||| ||||| || Sbjct 35438 GCGTGCTGGGCGACGTAACCAATGACCAAGTTGGGGTGCTTCCACATCTCACCAGAG-CC 35496 Query 225092 CGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTG 225151 | ||||| || ||| || || ||||| || || | ||| |||| || ||| Sbjct 35497 GGGCTCGGT-----GTCACCGACGACGAGCTTGACCAGGGTCGACTTACCCGAGCCGTTG 35551 Query 225152 GGGCC 225156 ||||| Sbjct 35552 GGGCC 35556 >seq180 Length=182808 Score = 86.0 bits (94), Expect = 1e-11 Identities = 356/550 (65%), Gaps = 29/550 (5%) Strand=Plus/Plus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| ||||| || || ||| ||||| ||||||||| || |||||||||||||| || Sbjct 14580 GTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 14639 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372 || || |||||||| |||| | |||||| || ||||| | | |||||| ||| Sbjct 14640 ACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATACCCTCGACGGC 14699 Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAA---GGAGCGGTCG-CGCGAAAAGTATTTCGA-- 10426 | |||| ||||| || || || || || ||| | | ||| | | ||| Sbjct 14700 AGCAAAGGCAACGAGACGTTCGGCAAAGGTGGCGCGCTTGTCGCTGA---TCCAGCGAAG 14756 Query 10427 GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAGCTTGTT 10486 |||||| | ||||||| || | || || ||||||| || || ||||| | Sbjct 14757 GGCCCAGTCAGCCTTCTCCTTGACTACGGGAATGGTCTCGACGGCGTCAAAGAGGAACT- 14815 Query 10487 ACGCTCGGTCTCGTCCTCA---ATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTG 10543 ||| | || || |||| || | || | ||| || ||||| |||| ||| Sbjct 14816 -CGCGCTGT-TCAGGCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTG 14873 Query 10544 GACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCGAGGGGTCCGTGACTT 10602 || | |||| | ||| | ||||||| ||| || ||| || || || Sbjct 14874 GATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAT-CGGGCCTCGGCAGCCTGGA--- 14929 Query 10603 CCTCGGCAAAGTTG--TTGTTC----AGGTTCTCCATCACCATGCCATCGCTGCCTGCAA 10656 |||||| || || | | || |||||||| | || || || ||| | | || | Sbjct 14930 CCTCGG---AGCTGAATCGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGA 14986 Query 10657 AGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGT 10716 ||||| |||||| |||| ||||||||| ||||||| ||||| ||||| | ||| | Sbjct 14987 AGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCATTGTCGTTGAGTTTGTTGTCCCAAT 15046 Query 10717 CTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCT 10776 | | || | ||| | || |||||| |||||||||| | || | ||||| | Sbjct 15047 CGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCTGCCTTTT 15106 Query 10777 TGTACATCTG 10786 ||||||| || Sbjct 15107 TGTACATTTG 15116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619577531400