Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq241 392 6e-104 seq180 257 3e-63 >seq241 Length=120793 Score = 392 bits (434), Expect = 6e-104 Identities = 930/1382 (67%), Gaps = 50/1382 (4%) Strand=Plus/Plus Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 || |||||||| | ||| ||||||||||| |||| ||| |||| || | | Sbjct 69768 CCCAGAGGTCCGAAGGGGTGACACCCCACATGTCGTACTGAAGCTCACCCT-GCGAAGCG 69826 Query 244335 GGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TC 244392 ||| ||| | |||||| ||||| |||| ||| ||||||| || | ||| || Sbjct 69827 GGCGAGCCGGCATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCA-CGATCGCTC 69885 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCAT---GTCG-CGGGCCTTGC 244448 ||||||||||| |||||||||||| |||||| || ||| | || || |||| | Sbjct 69886 GAGGGCGGCGTGGTAGATGGTCTCAAAGATC----TGAACATTAAGACGACGAGCCTCGG 69941 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | |||| | |||||| ||||||||| |||| || || ||||| || ||||| | Sbjct 69942 GCGACTCAAAGGCGTAGCCCATGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATAC 70001 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 ||||||| | ||| ||| ||||||| | || | || | | ||||| || ||||| | Sbjct 70002 CGATGGGACGGTGACGCATGTTGGACCTGCGAGCCTCCTCG-ACGGGATAGTAGTTGATG 70060 Query 244568 TCGATCACCTTGTTGAGGTT---GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 ||||| | |||||| | ||| || | || | || ||| ||| | || ||| Sbjct 70061 TCGATGATCTTGTTCAAGTTCTTGCAGATGGCCTTGGCGACCTCGTGG---AGACGCTTG 70117 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 || ||||| ||| | || || || | || | ||| | ||| |||| Sbjct 70118 AAATCGTA--------GATTTT-GGTGACGGGG-TCG--ATAAAGGTGGGGAGAGCGATC 70165 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||| |||||||||||||| ||||| || | | |||||| || |||||||||||| Sbjct 70166 GAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCAG 70225 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| ||||||||||||||| |||| || || ||| |||| ||| |||||| Sbjct 70226 AGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGATTGGCAGCGTCC 70285 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 |||||||| |||||||| ||||||||| ||| | |||||| | || |||||| Sbjct 70286 TTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGC 70345 Query 244865 TCCCTAGCCTTGACCGTCC--TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | | |||||||| || | | |||| ||||| ||||||||||| ||| || Sbjct 70346 TTCTGGGCCTTGACGGTGCGCTTGGAGCGA--CCCTCGGCCTCGTAGCGCTCGTAGAGAC 70403 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 ||| || ||| ||| || ||| | || ||||||||| ||||||||||| Sbjct 70404 GCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCG 70463 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| || ||| | || ||||||| ||||||||| ||||||| ||||||||| | || Sbjct 70464 ACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGA 70523 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 |||| || | || | | ||| ||| || |||||| | ||| || | || |||| Sbjct 70524 AGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTTCTTACGCAGGTCGAGGAACTCAA 70583 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||| || |||||| ||||| ||||||| || | ||| || || |||||||| || | Sbjct 70584 AGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCAGGACGCTTGTTACCAC 70643 Query 245163 CCTGGTCCACCATCCTCTCGAG-CGCGTTG---AAGATGCGCAGGGTAGGCACTATGCCG 245218 ||||||| | | | |||| || |||| |||| || || | || || || ||| Sbjct 70644 CCTGGTCGA----CGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCG 70699 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 || | ||| ||||| || ||||||| || | |||| | | | |||| Sbjct 70700 TTGCTGACGCCATTGGTACCGGCAATGTAGGAACCGGTACCCCGAATGCAGTGGATGTTG 70759 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | || | || |||||| ||||||||| | ||||||| |||||| ||||| ||| Sbjct 70760 AGACCAATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAAATG 70819 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || || ||| ||||||| ||| || || || || || ||||| || | ||| Sbjct 70820 CCGTCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGA 70879 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCG 245458 | | | |||||| || |||||| |||||||||||||| ||| | || | Sbjct 70880 GTACCGGCGTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTG 70939 Query 245459 TACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGG 245518 || |||| || | ||||||| | ||||||||| | || | |||||| Sbjct 70940 TAGGTCTCGATGGCACTCTCGATGTCCTGGCCGTGGATACCAACAGCAACACGCATGAGC 70999 Query 245519 GTGTGCTGGGG-CGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCG 245575 |||||||||| ||| ||| | | || | || | ||| | ||||||||||||| Sbjct 71000 ATGTGCTGGGGACGT-TCG--GCGACCTTGCCGTTGATACGGAGGAGGTAGGAGCGCTCG 71056 Query 245576 AGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCG 245635 || |||||||| |||||| | |||| |||||| | || ||| ||| | |||| Sbjct 71057 AGGGTCTTGAAACCAAAGAAATTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCG 71116 Query 245636 AG 245637 || Sbjct 71117 AG 71118 >seq180 Length=182808 Score = 257 bits (284), Expect = 3e-63 Identities = 505/732 (69%), Gaps = 20/732 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||| ||||| | || | ||| |||||||||||||||||| ||||| Sbjct 15122 ATCTGGCAAATGTACAAAAAGGCAGAAGCT-TCCTTCTGGACCGCCGAGGAGATCGACCT 15064 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTTT-TTCCT 42412 | || ||| || ||||| || || | |||| || || ||| | Sbjct 15063 CTCAAAAGACCTTCACGATTGGGACA-ACAAACTCA--ACGACAATGAGCGTCACTTCAT 15007 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 | || | || ||||||||||||||||| ||||| || ||||| |||||||| | | Sbjct 15006 CTCGCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTCGTCGA 14947 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||| ||||| ||| ||||| || |||||||||||||| ||||| Sbjct 14946 GCGATTCAGCTCCGAGGTCCAGGCTGCCGAGGCCCGATGCTTCTACGGCTTTCAGATCAT 14887 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| ||| ||| | || || |||| ||||||| || || Sbjct 14886 GATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCCGTGAGCC 14827 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | |||| | || || | ||| | ||||| || ||| ||||| ||||||| Sbjct 14826 TGAACAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATTCCCGTAGTCAAGGAGAAGGC 14767 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| || ||||||| || | | | ||| || || | ||| | || || | Sbjct 14766 TGACTGGGCCCTTCGCTGGATC-AGCGACAAGCGCGCCACCTTTGCCGAACGTCTCGTTG 14708 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| | ||||||||||| ||||||||||| ||| | |||||||||||||||||||||| Sbjct 14707 CCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGCTCA 14648 Query 42772 AGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || ||| || |||||||| ||||||||||| ||||| |||||| | | || || Sbjct 14647 AGAAGCGTGGTCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAA 14589 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAAGCCCTC 42889 || || || | ||||||||||| ||||| ||| ||||| |||| | | | || | | Sbjct 14588 GGCCTTCACACCGACTTTGCCTGTCTCCTCTTC---AGCCATCTCAAGAAGCGCGCACAC 14532 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 | | | || | | ||||| || |||||||| ||||| | ||| | || Sbjct 14531 CCCGACACCGTTCTGAG-TATCATTACCGAGGCCGTCTCCATCGAACAACGCTTCTTGAC 14473 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 | | |||||||| || ||||||||||| | |||||||||| ||||| | Sbjct 14472 CGATGCCCTGCCCGTTAGTTTGATCGGCATGAACGCAAAGCTCATGTGCACATACATTGA 14413 Query 43010 GTACGTCGCCGA 43021 ||| |||||||| Sbjct 14412 GTATGTCGCCGA 14401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336307961200