Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 4e-14 >seq8 Length=117649 Score = 93.3 bits (102), Expect = 4e-14 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| |||||| || || || ||||| | ||| | || ||||| ||||| || | | Sbjct 22462 AACATGTGACAAGGGGGTAGAGCCATGAGCGATAGATCTGCCGGATTCCATGCTGAAAGG 22403 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTA-CGACAATTGGTC 20490 | ||| | || |||| ||||| || || ||| ||| | || || ||| | |||||| Sbjct 22402 AGGATGCGTCGATCGGTAGGATTGTTCTTGATTTTATCGATAACGTCGCGA-AGTTGGTC 22344 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 | || || ||||||||||| | || ||| | ||| || |||||||| | ||| Sbjct 22343 GACTCCTTGACCTGTATAGTCGGTGTCGCAGTCGATGTAACGGGCGCCAAAGTGACGCCA 22284 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGC 20610 || || ||||| || ||||||||||| || || | || || | || ||||| | Sbjct 22283 TTGAAAGCCGTAGACGGGTCCCAAATCGCCTTCTCGTCGATGGGTGAGTCCGCGAGAATC 22224 Query 20611 CAGGAACTCCCTGGAGCCATTTTTGTCCCATAT 20643 || ||||| | || || ||| |||||| || Sbjct 22223 GAGAAACTCGCGAGATCCGTTTCCGTCCCAAAT 22191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371448295800