Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq112 131 4e-25 >seq112 Length=308905 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| ||| ||||| |||| ||| || || ||||| || ||||| | | Sbjct 97000 CCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 97059 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | || || || || ||||| |||||||| || ||| Sbjct 97060 AGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGG 97119 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || || || || || | ||| || || || Sbjct 97120 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 97179 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 97180 TCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| ||| ||||| |||| ||| || || ||||| || ||||| | | Sbjct 97228 CCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 97287 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | || || || || || |||| ||||| || ||| Sbjct 97288 AGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGG 97347 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || || || || || || || | ||| || || || Sbjct 97348 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 97407 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 97408 TCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || || ||||| || |||||| Sbjct 96544 CCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 96603 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || || ||||||| ||||| ||| ||| Sbjct 96604 AGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGG 96663 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || || || || || || || | || || || || Sbjct 96664 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACC 96723 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| || || || |||||||| || || ||||| Sbjct 96724 TCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| ||||| || || || || | || || || || ||| Sbjct 96352 TCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAG 96411 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || ||||| || || |||||||| || || || || || || Sbjct 96412 ATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTG 96471 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || |||||||||||||| ||||||| |||||||| Sbjct 96472 TCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACA 96531 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 96532 AAAATCTGCAT 96542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650696991110