Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq112 141 9e-29 seq55 113 5e-20 seq199 82.4 8e-11 seq8 82.4 8e-11 >seq112 Length=308905 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || || |||| ||| || || || || |||||||| || | Sbjct 96999 ACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 97058 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || |||| || ||||||||||||||| | ||||| ||||||||||||||||| Sbjct 97059 GAGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGG 97118 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | |||||| | || || Sbjct 97119 GATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGAC 97178 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||||| ||| ||||||||||| ||||| Sbjct 97179 CTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || || |||| ||| || || || || |||||||| || | Sbjct 97227 ACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 97286 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || |||| || |||||||| || ||| |||| | ||||||||||||||||| Sbjct 97287 GAGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGG 97346 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | |||||| | || || Sbjct 97347 GATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGAC 97406 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||||| ||| |||||||| || ||||| Sbjct 97407 CTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| ||||||||||| || | | ||||| | ||||| |||||||| ||||| || Sbjct 96808 TCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAA 96867 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||||||||| || ||||| || || || || || || || ||| ||| Sbjct 96868 ATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTG 96927 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | |||||| | || ||||| | || | |||||||||||| | || || || Sbjct 96928 TCAATGGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 96987 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 96988 AAGATCTGCAT 96998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || |||| |||||| || || || |||||||| || Sbjct 96543 ACCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 96602 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||||||||||||||| || ||| | || | |||||||| |||||||| Sbjct 96603 CAGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGG 96662 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | || || Sbjct 96663 GATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAAC 96722 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| || || | || || || || |||||||| Sbjct 96723 CTCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | | || || |||| ||||| || || || ||||||||||| Sbjct 96316 CCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTC 96375 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || |||||||| || ||| | || | ||||||||||||||||| Sbjct 96376 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGG 96435 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | |||||| | || || Sbjct 96436 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 96495 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| |||||||| || || || ||||| ||||| Sbjct 96496 TCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 >seq55 Length=29365 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | || || || |||| Sbjct 16002 AGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCC 16061 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| ||||||| |||||||| || || ||||| ||||| || || Sbjct 16062 TCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCC 16121 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || || || || || | ||| | |||| Sbjct 16122 TGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTC 16181 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||||||| || || || || ||||| Sbjct 16182 TTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | || || || || ||||||||||| || | || ||||| | || Sbjct 16229 AAGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATC 16288 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | ||||| |||||||||||||| ||||| ||||| || || Sbjct 16289 CTCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTC 16348 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || || || || || | || | || Sbjct 16349 CTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGT 16408 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | || ||||| || || ||||| Sbjct 16409 CTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 16441 >seq199 Length=93844 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| |||| Sbjct 53674 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 53733 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || || ||||||||||| || |||||||| || || || Sbjct 53734 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 53793 Query 64352 TGTATTTT 64359 || || || Sbjct 53794 TGGATCTT 53801 >seq8 Length=117649 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| |||| || |||||||| ||| Sbjct 82439 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCG 82380 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | || || |||||||||||||| || || || || || || || || || Sbjct 82379 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTT 82327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643269837800