Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq241 327 1e-84 >seq241 Length=120793 Score = 327 bits (362), Expect = 1e-84 Identities = 1117/1722 (65%), Gaps = 54/1722 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| ||| ||||| ||||| || || ||| || ||||||||| || | |||| | Sbjct 71082 TACAATTTCTTTGGTTTCAAGACCCTCGAGCGCTCCTACCTCCTCCGTATCAACGGCAAG 71023 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||| || || || || |||| ||||| || || | || || |||||||| ||| Sbjct 71022 GTCGCCGAACGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATCCACGGCCAGGAC 70963 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACC 93897 || || || | | | | || |||| | | ||| | |||| || || Sbjct 70962 ATCGAGAGTGCCATCGAGACCTACAACCTCATGTCGCAAAAGTACTTTACCCACGCTTCC 70903 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || ||||| |||||||| || || || |||||| | || ||||||||||| | || Sbjct 70902 CCCACCCTCTTCAACGCCGGTACTCCCCACCCACAGCTCTCGTCGTGTTTCCTCGTCACC 70843 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||||| ||| ||| |||| ||||| |||||| ||| || | ||||| Sbjct 70842 ATGAAGGACGACTCGATCGACGGCATTTACGACACTCTCAAGACCTGCGCCATGATCTCC 70783 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || ||| || || || || ||| ||||| | | || | | ||||||||||| Sbjct 70782 AAGACCGCCGGTGGCATTGGTCTCAACATCCACTGCATTCGGGGTACCGGTTCCTACATT 70723 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||||||||||||| | |||||| |||| || ||||| || ||||| |||||| || Sbjct 70722 GCCGGTACCAATGGCGTCAGCAACGGTATCGTACCCATGCTTCGTGTCTTTAACAACACG 70663 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || |||||||| |||||||||||| | | | ||| | || || |||| | ||| Sbjct 70662 GCTCGCTACGTCGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACATTGAG 70603 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||| |||| || | ||| |||||||||| ||||||||||| || || | Sbjct 70602 CCTTGGCACTCGGATGTCTTTGAGTTCCTCGACCTGCGTAAGAACCACGGAAAGGAGGAG 70543 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | | ||| |||| ||||||||||| |||||||| || || || || ||||| | || Sbjct 70542 GTGCGTGCCCGAGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTT 70483 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||| | ||| | |||| || | || ||||| || || ||||| || ||||| Sbjct 70482 GAGCAGAACGGTGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTGC 70423 Query 94378 TGTGGATCG-CG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA--- 94432 | || || || ||||| | || | || ||||| | |||| ||| Sbjct 70422 TACGG--CGACGAATTTGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAAGC 70365 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | | || | | || |||||| ||| | ||| | || ||| ||||| | Sbjct 70364 GCACCGTCA---AGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCG 70308 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 ||| |||| |||| | | ||||||| ||| ||| |||| ||||||| || |||| | Sbjct 70307 GTAACCCCTTCATCCTCTACAAGGACGCTGCCAATCGCAAGAGCAACCAGAAGAACCTTG 70248 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | |||||| |||| || || ||||||||||| ||||||| | | | || |||||| Sbjct 70247 GCACCATCAAGTGCTCCAACCTCTGCACCGAGATCATCGAGTACAGTGCCCCCGACGAGG 70188 Query 94613 TTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCAC---TTTCGTGCGAGATGCCTACA 94669 | || || || ||||| | ||| ||| || |||| | ||| | | || | | Sbjct 70187 TCGCCGTCTGCAACCTTGCCTCGATCGCTCTCCCCACCTTTATCGACCCCGTCACCAAAA 70128 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCTT 94727 ||||| ||| || ||| | ||| | || |||| || | Sbjct 70127 --TCTACGATTTCAAGCG-TCTCCACGAGGT-----------CGCCAAGGCCATCTGCAA 70082 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 |||| |||||| | | ||||||| |||| ||| |||||| |||||| | || || Sbjct 70081 GAACTTGAACAAGATCATCGACATCAACTACTATCCCGTCGAGGAGGCTCGCAGGTCCAA 70022 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || || || |||||||| ||||| ||||||||| |||| ||||| | |||| || Sbjct 70021 CATGCGTCACCGTCCCATCGGTATCGGTGTCCAGGGTCTCGCTGACGCCTTCATGATCAT 69962 Query 94848 GCGTCTGC-CCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | | || | ||| || || ||| || || | ||| | | || || || | || Sbjct 69961 G-GGCTACGCCTTTGAGTCGCCCGAGGCTCGTCGTCTTAATGTTCAGATCTTTGAGACCA 69903 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACAC 94965 | || ||| ||| | | | ||| | | |||| || ||| ||| | || Sbjct 69902 TCTACCACGCCGCCCTCGAGCGATCGTGCGAGCTGGCTCA----GGAGCACGGCACCTAC 69847 Query 94966 GAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 || | | ||| ||||| ||| | ||||| |||||| |||| | ||||||| Sbjct 69846 GAGACCTATGCCGGCTCGCCCGCTTCG--CAGGGTGAGCTTCAGTACGACATGTGGGGTG 69789 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAG--CTCTACGCGCTGATGTTATCAAACACGG 95081 | | || |||| || | ||||||| | ||| | || || || ||| ||||| Sbjct 69788 TCACCCCTTCGGACCTCTGGGACTGGGCCGGCCTCAAGGCCAAGA--TTGCCAAGCACGG 69731 Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141 | || || |||| || | ||||| ||||| || ||||| || ||||| || || Sbjct 69730 TCTGCGCAATTCGCTCCTCCTCGCCCCGATGCCTACCGCCTCTACAAGTCAGATTCTCGG 69671 Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201 |||||||| || ||||| | ||| |||||| | ||| | || || |||||||| Sbjct 69670 TTTCAACGAGTGCTTTGAACCTTACACTTCCAACATTTACTCTCGTCGTGTACTCGCCGG 69611 Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGT--CTCTGGGTGTGTGG 95259 || |||| || |||| | || || || || ||| | ||| ||||| Sbjct 69610 CGAGTTCCAGGTGGTCAATCCCTGGTTGCTCCGCGAGCT--CGTTGAGCAAGGTTTGTGG 69553 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAAC---GGCTCCGTCCAGAACATCCCG 95316 |||| | ||||||| | | ||| || || || |||||||| | || Sbjct 69552 AACGACACCATGAAGAACCGCATCAT---TGCCCACGGTGGTTCGATCCAGAACGTTCCC 69496 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || || || |||||| ||||||||||||||| ||||||||| ||| | Sbjct 69495 GGCATCCCCGACCGTATCAAGAAGCTCTACAAGACCGTATGGGAGATCAGCCAGAAGGCC 69436 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || | ||| || |||| ||| || | |||||||||||| Sbjct 69435 ATCATTGACATGGCTGCCGACCGAGGTGCATTCATCTGCCAG 69394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721684910200