Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq241 304 1e-77 seq112 125 7e-24 seq199 102 8e-17 seq55 102 8e-17 >seq241 Length=120793 Score = 304 bits (336), Expect = 1e-77 Identities = 1071/1632 (66%), Gaps = 47/1632 (3%) Strand=Plus/Plus Query 152850 CGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAA 152908 |||||||| ||||| ||||| ||| | || || || |||||||| |||| ||||| | Sbjct 69413 CGGTCGGCAGCCATGTCAATGATGGCCTTCTGGCTG-ATCTCCCATACGGTCTTGTAGAG 69471 Query 152909 ATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT 152968 || || | | || || || || || |||||| || || || ||| |||| || Sbjct 69472 CTTCTTGATACGGTCGGGGATGCCGGGAACGTTCTGGATCGAACCACCGTGGGCAATGAT 69531 Query 152969 AGCGTTTCGTATTTCGGGCGTGTACACGTTCAGT--TTAATGAGGTCATCGATCAAGTAC 153026 ||| ||| | | | ||| | ||| | | | || ||| || || ||| | Sbjct 69532 -GCGGTTCTTCATGGTGTCGT-TCCACAAACCTTGCTCAACGAGCTCGCGGAGCAACCAG 69589 Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 | |||||||| || |||||||| || | || || | | || | ||| |||| || Sbjct 69590 GGATTGACCACCTGGAACTCGCCGGCGAGTACACGACGAGAGTAAATGTTGGAAGTGTAA 69649 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 ||||||||| | ||||| || || || ||| || | ||||| ||||| || Sbjct 69650 GGTTCAAAGCACTCGTTGAAACCGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCG 69709 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAA-TC 153205 | | | ||||| |||| |||||| ||| | | |||| | ||| ||| | || Sbjct 69710 AGGAGGAGCGAATTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAG-GCCGGCCCAGTC 69768 Query 153206 CCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGG 153265 ||| || |||| || || | ||||||||||||||| | | | || | ||||| Sbjct 69769 CCAGAGGTCCGAAGGGGTGACACCCCACATGTCGTACTGAAGCTCACCCTGCGAAGCGGG 69828 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC-CTCGA 153324 ||||||| | || |||| |||||| || ||||| ||||| | | | ||||| Sbjct 69829 CGAGCCGGCATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCA-CGATCGCTCGA 69887 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GCTTCTTCGCTC 153383 | ||| | | ||| ||||| || ||| || ||| ||| || | || || | Sbjct 69888 GGGCGGCGTGGTAGATGGTCTCAAAGATCTGAACATTAAGA-CGACGAGCCTCGGGCGAC 69946 Query 153384 TCGTACGGCAT-GCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442 || | ||| | || || | || |||||||| || |||||||||| ||||| ||||| Sbjct 69947 TCAAA-GGCGTAGCCCATGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATACCGAT 70005 Query 153443 GGGTCGATGCTTCTCGTTG---CTGCG--CCTCGCGCTCGCTATGGGATAGTGATTGCGA 153497 ||| || || | |||| ||||| |||| |||| | |||||||| ||| Sbjct 70006 GGGACGGTGACGCATGTTGGACCTGCGAGCCTC---CTCG--ACGGGATAGTAGTTGATG 70060 Query 153498 TCGATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAA 153556 ||||| || ||||| | ||| ||| | | || | | | | | || || ||| Sbjct 70061 TCGATGATCTTGTTCAAGTTCTTGCAG-ATGGCCTTGGCGACCTCGTGGAGACGCTTGAA 70119 Query 153557 ATCATAGGTCATTTCGTCGACGCGTACGC-ATCGATTC--ACGGCAATAGACGCCAGATT 153613 ||| ||| | ||| || |||| | || | | | | || || || || || || Sbjct 70120 ATCGTAGAT--TTTGGT-GACGGGGTCGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTT 70176 Query 153614 ACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCA 153673 |||||||| ||| |||| | | ||||||| | |||||||| |||||||||| ||| Sbjct 70177 GCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCA 70236 Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCAT 153733 || ||| ||| | || | ||| ||||| ||||||||| ||||| ||| |||| || Sbjct 70237 CTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGAT 70296 Query 153734 GTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTC 153792 | | || ||||||||| |||| |||| ||| | || || | ||| || Sbjct 70297 GAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGG-CGTACCAGAGCTTCTGGGCCT 70355 Query 153793 GCACCCGCTGCCGAT--AGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTC 153850 || | ||| | |||| |||||| |||||| |||||||| || |||||||| || Sbjct 70356 TGAC--GGTGCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCAAATTC 70413 Query 153851 GTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATC 153910 ||||||||||||||||||||| ||||| |||| | || ||||| |||||||| | | Sbjct 70414 GTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACC 70473 Query 153911 G-TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGC 153969 | || || | || | |||||| ||||| || |||||||| ||||| | ||| || | Sbjct 70474 GTTCTGC-TCAACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTC 70532 Query 153970 GCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCG 154028 | | | ||| |||||| || ||| ||| | ||| | | ||| || Sbjct 70533 G-GGCACGCACCTCCTCCTTTCCGTGGTTCTTACGCAGGTCGAGGAACTCAAAGACATCC 70591 Query 154029 GCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCG 154085 | |||||| || |||||||||| ||| | |||||| |||| || || ||||| ||| Sbjct 70592 GAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCG 70651 Query 154086 ACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGCC 154144 |||| ||| || | ||||| ||||| || | ||||||| | | ||| |||| | ||| Sbjct 70652 ACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCG-TTGCTGACGCC 70710 Query 154145 GTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCC 154204 ||||| || | | ||| | || | || | ||| | |||||||| Sbjct 70711 ATTGGTACCGGCAATGTAGGAACCGGTACCCCGAATGCAGTGGATGTTGAGACCAATGCC 70770 Query 154205 GCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCT 154264 ||| || ||| || || |||||| || || ||| ||||||||||| Sbjct 70771 ACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTCGATCGA 70830 Query 154265 ATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGA 154324 ||||| | | || | ||||||||| | | || || | | || || || Sbjct 70831 GTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTT 70890 Query 154325 AAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGAT 154384 ||||||||||| ||||| ||||| ||||| ||| | | ||| || ||||| Sbjct 70891 GAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGAT 70950 Query 154385 GGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGG 154444 ||| ||||| || | |||||| || || | || || ||||||||||||||||| || Sbjct 70951 GGCACTCTCGATGTCCTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGG 71010 Query 154445 ACGTTCGGCGAC 154456 |||||||||||| Sbjct 71011 ACGTTCGGCGAC 71022 >seq112 Length=308905 Score = 125 bits (138), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||||| || | || | | |||||||| || |||||||| ||||| Sbjct 96315 GCCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCT 96374 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| |||||||| || ||||| | | |||| | ||||| ||||| ||||| Sbjct 96375 CAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGG 96434 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || || || ||| | || | || | |||| | | ||| || | ||||| Sbjct 96435 GATACCCTCCTTATCC-TGAATCTTGGCCTTGACATTGT-CAATGGTATCAGAAGACTCG 96492 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | ||| | ||| ||||| |||| || || |||||||||||||| Sbjct 96493 ACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || |||| | Sbjct 97033 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCA 97092 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| |||||||| ||||| ||||| ||||| || ||||| ||| | || | || Sbjct 97093 AAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCTTGGCCTTGAC 97151 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||| ||||| | || | || ||||| |||||||| | Sbjct 97152 ATTG-TCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCT 97210 Query 138599 TTACAAAAATCTGCAT 138614 |||| ||||||||||| Sbjct 97211 TTACGAAAATCTGCAT 97226 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || ||||| | | Sbjct 97261 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCA 97320 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || | ||||| ||||| ||||| ||||| || || || ||| | || | || Sbjct 97321 AAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATC-CTGAATCTTGGCCTTGAC 97379 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||| ||||| | || | || ||||| |||||||| | Sbjct 97380 ATTG-TCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCT 97438 Query 138599 TTACAAAAATCTGCATG 138615 |||| || ||||||||| Sbjct 97439 TTACGAAGATCTGCATG 97455 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||| || ||| || || || ||||| | | Sbjct 96577 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCA 96636 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| | ||||| || || ||||| ||||| || || || ||| | || | || Sbjct 96637 AAGATCAATCGCTGCTGATCGGGAGGGATACCCTCCTTATC-CTGAATCTTGGCCTTGAC 96695 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||| | || | ||| || || || || || | Sbjct 96696 ATTG-TCGATCGTGTCCGAAGACTCAACCTCCAAAGTGATCGTCTTTCCTGTGAGTGTCT 96754 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| || ||||| Sbjct 96755 TGACAAAGATTTGCAT 96770 >seq199 Length=93844 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || ||||||| Sbjct 53692 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCG 53751 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 53752 AAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 53811 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || ||||| || || || || Sbjct 53812 TTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTAAGGGTCTTC 53871 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 53872 ACAAAGATCTGCAT 53885 >seq55 Length=29365 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| || |||||||| || || || | | Sbjct 16248 GACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCA 16307 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || ||||| ||||| ||| || || | Sbjct 16308 AAGATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 16367 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||| ||||||| || | || || || || || || ||| Sbjct 16368 TTGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTT 16427 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 16428 ACAAAGATCTGCAT 16441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 15986 GCCACCGCGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 16045 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||||||| || || |||| | || |||||||| || || || || Sbjct 16046 GAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGG 16105 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | | || | |||||| | ||||| | Sbjct 16106 AATGCCTTCCTTGTC-CTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGA 16164 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| |||| ||| || ||||| |||||||| Sbjct 16165 CCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260880196400