Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq55 91.5 1e-13 seq112 82.4 5e-11 >seq55 Length=29365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||||||| || || || |||||||| || |||| ||| |||| || | || Sbjct 16010 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCGAGCTG 16069 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | || | |||||| || || |||||| ||||||||||| ||| || Sbjct 16070 CTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGAATCTT 16129 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || | || ||||| ||||| || Sbjct 16130 GGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTACCGGT 16189 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||| || ||||| || |||||| Sbjct 16190 CAAAGTCTTGACAAAGATCTGCATA 16214 >seq112 Length=308905 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || |||| | || || | ||||| || || || || || ||||||||||||| Sbjct 96314 TGCCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGC 96373 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | || || | || || ||||| | ||||| ||||| |||||| | Sbjct 96374 TCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAG 96433 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || ||||| || ||| ||| || ||| | || || ||||| | || | Sbjct 96434 GGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGA 96493 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || || ||||| |||| || || |||||||| |||||| Sbjct 96494 CCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCATA 96543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390932849825