Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq112 127 2e-24 seq55 100 3e-16 seq199 95.1 1e-14 seq180 86.0 6e-12 >seq112 Length=308905 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || | || | || ||||| || || || |||||||||| || ||| || | Sbjct 96328 CGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCA 96387 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||||||||||||| |||||||| || |||||||| Sbjct 96388 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTA 96447 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || ||||| | || | ||| || | | |||||| || | || | | Sbjct 96448 TCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATC 96507 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||||| || || |||||||||||||| Sbjct 96508 GTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 96544 CCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 96603 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || ||||| ||||||||||||||||||||||||| Sbjct 96604 AGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGG 96663 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| || || ||||| | |||| ||||||| | ||| || Sbjct 96664 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACC 96723 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || || || || || || ||||| || ||||| Sbjct 96724 TCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||||| || | || | || |||||| ||||| ||||| || | Sbjct 96772 CCACCGCGAAGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGAC 96831 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| | || | ||||||||| || || || Sbjct 96832 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGA 96891 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || || ||||| | || | ||| || | | ||||||| Sbjct 96892 ATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACT 96951 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || || || ||||| |||||||| Sbjct 96952 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | || | ||||||||| || || || ||||| || Sbjct 97228 CCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 97287 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || ||||| | |||||||||||||| |||||||| Sbjct 97288 AGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGG 97347 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| || || ||||| | || | ||| || | | |||||| Sbjct 97348 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 97407 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || ||||||||||| ||||| || ||||||||| Sbjct 97408 TCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATG 97455 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | || | ||||||||| || || || ||||| || Sbjct 97000 CCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 97059 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || || |||| | |||||||| |||||||| Sbjct 97060 AGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGG 97119 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||||| | || | ||| || | | |||||| Sbjct 97120 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 97179 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||||||||| ||||| ||||||||||| Sbjct 97180 TCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 >seq55 Length=29365 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | || | ||| | |||||||| || || || ||||| || Sbjct 15984 GCGCCACCGCGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCC 16043 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || || || ||||| ||||| ||| | || | ||||||||||| || Sbjct 16044 GAGAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGT 16103 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||| ||||||||| || || ||||| | |||| |||||||| |||| Sbjct 16104 GGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCG 16163 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || ||||||| ||| || ||||| |||||||| Sbjct 16164 ACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 >seq199 Length=93844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || ||||| || || || ||||| || Sbjct 53656 GCACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 53715 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| || || ||||| || || ||| |||| | ||||||||| || || Sbjct 53716 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGG 53775 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || |||||||||||| ||| || ||||| |||| || | |||||| | | ||| Sbjct 53776 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCGGAAGACTC 53834 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || || || ||||| |||||||| Sbjct 53835 CACCTCGAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCAT 53885 >seq180 Length=182808 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||||||||| | | || || || ||||||||| |||||||||| ||| || || Sbjct 14723 GCCGAACGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCC 14664 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || || | | || | || | |||||||| ||||| || ||||||||| Sbjct 14663 TCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTC 14604 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC 47294 ||||| | || |||||||| |||||| |||||||||||||| Sbjct 14603 ATCTCCCGTGATGAAGGCCTTCACACCGACTTTGCCTGTCTC 14562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499343778800