Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq55 100 3e-16 seq112 98.7 9e-16 >seq55 Length=29365 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| || || || || ||| Sbjct 16212 ATACCACCACGGAGACGAAGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCG 16271 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || ||||| | || | ||| |||||||| || Sbjct 16272 GAGAGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGT 16331 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || || || || |||| || | || | |||||||| ||||| Sbjct 16332 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAGGACTC 16390 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || |||||||| || || |||||||| || |||||| Sbjct 16391 GACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCATC 16442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || ||||| || || || ||||| ||||| || || || | Sbjct 15987 CCACCGCGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 16046 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || ||||| ||| | || | || ||||| || || ||| Sbjct 16047 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGA 16106 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || ||||| || |||| || | |||||| || |||||||| Sbjct 16107 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 16166 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || || ||||| | ||| || ||||| || ||||| Sbjct 16167 TCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 >seq112 Length=308905 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| || || || || || || ||||| ||||| || |||||||| Sbjct 96316 CCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTC 96375 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || || || || | |||||||| |||||||| || || Sbjct 96376 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGG 96435 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||| ||||| || |||| || | ||| || ||||||||||| Sbjct 96436 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 96495 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || ||||| | || || |||||||| ||||| Sbjct 96496 TCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || ||||| || ||||| ||||| || || || Sbjct 97225 ATACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCC 97284 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || || | || || || || | |||||||| |||||||| || Sbjct 97285 GAGAGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGA 97344 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| ||||| || |||| || | ||| || ||||||||| Sbjct 97345 GGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCG 97404 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || ||||| ||||| ||||| || || ||||| Sbjct 97405 ACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | || | ||| |||||||| || |||||||| || ||||| ||||| Sbjct 96853 TGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGAATC 96912 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || | ||| || |||||||||||||| | || | || |||||| Sbjct 96913 TTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTGATGGTCTTGCCG 96972 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || ||||| Sbjct 96973 GTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || ||||| || ||||| ||||| || || || Sbjct 96997 ATACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCC 97056 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || || | || || || || | || | || |||||||| || Sbjct 97057 GAGAGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGA 97116 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || ||||| || |||| || | ||| || ||||||||| Sbjct 97117 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCG 97176 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 97177 ACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001815740200