Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq241 233 2e-56 seq180 122 1e-22 seq200 111 2e-19 >seq241 Length=120793 Score = 233 bits (258), Expect = 2e-56 Identities = 1140/1785 (64%), Gaps = 53/1785 (3%) Strand=Plus/Plus Query 115522 AGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTG 115581 ||| | |||||||| | || | | || ||| | ||||||||||| | || |||||| Sbjct 69251 AGGGTAAACTGAATAGCGCTGGACGCGGGCTTGGTACGGAGGTAGTAAGTTCCAGTCTTG 69310 Query 115582 AGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCC 115641 ||||||| |||||| | || | ||||| |||| | || || || ||| | Sbjct 69311 AGCCCCTTCTTCCAACCGTAAAAGTGCATCGAGGTGAGCTGACCGAAGGTGGGAGCTGAA 69370 Query 115642 ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCA 115701 | | || ||| | || || || |||||| || || || || ||||| ||| Sbjct 69371 AGGTGGATGTTGAGCGACTGAGACTGGCAGATGAATGCACCTCGGTCGGCAGCCATGTCA 69430 Query 115702 ATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 || | ||||| |||| ||||| || || ||||||| ||||| ||| || ||| Sbjct 69431 ATGATGGCCTTCTGGCTGATCTCCCATACGGTCTTGTAGAGCTTCTTGATACGGTCGGGG 69490 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATA--- 115815 || | | || ||||| || ||||| | | | |||| | | |||||| Sbjct 69491 ATGCCGGGAACGTTCTGGATCGAACCACCG---TGGGCAATGATGCGGTTCTTCATGGTG 69547 Query 115816 TCCTTTGACCAGAGACCAATCTTCTTGAGATCCT----CCACGAGGTGCTTATTGACAAC 115871 || || ||| | ||| || ||| || | || ||| |||||| || Sbjct 69548 TCGTT---CCACAAACCTTGCTCAACGAGCTCGCGGAGCAACCAGGG----ATTGACCAC 69600 Query 115872 AACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGC 115930 ||||| || ||||| || | ||| || ||||||| ||||| || ||||||| Sbjct 69601 CTGGAACTCGCCGGCGAGTACACGACG-AGAGTAAATGTTGGAAGTGTAAGGTTCAAAGC 69659 Query 115931 ACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGC 115990 |||| ||| ||| | || || ||| ||||| || ||||| || || | ||| || Sbjct 69660 ACTCGTTGAAACCGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAGGAGCG 69719 Query 115991 TGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCT 116050 ||||| ||||| | ||| |||||||| || ||||||| || | | Sbjct 69720 AATTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGGCCGGCCCAGTCCCAGAGGTCCG 69779 Query 116051 TTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 116110 | | ||||||| || |||| || ||| || || || ||||| || || Sbjct 69780 AAGGGGTGACACCCCACATGTCGTACTGAAGCTCACCCTGCGAAGCGGGCGAGCCGGCAT 69839 Query 116111 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGA 116169 | ||||| || | ||| | ||| |||| ||| | | |||| |||||||| ||||| Sbjct 69840 AGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGCGTGG 69898 Query 116170 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AG 116228 || || |||||||| || || |||| | |||||| || ||||| ||| || Sbjct 69899 TAGATGGTCTCAAAGATCTGAACATTAAGACGACGAGCCTCGGGCGACTCAAAGGCGTAG 69958 Query 116229 ACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTC 116287 | || | || || | || |||||||| |||||||||| || || || || || | Sbjct 69959 CC--CATGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGGTGAC 70016 Query 116288 TCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTA 116347 ||| || ||| | ||||| ||| |||||||| | || | ||||| | | | || | Sbjct 70017 GCATGTTGGACCTGCGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGATCTTGTTCA 70076 Query 116348 GATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT 116407 || ||| || |||| | || || || || | | |||| | | || Sbjct 70077 AGTTCTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGATTTTGGTGA 70136 Query 116408 CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 | | || | | | || || ||||| || || || || || || | | ||| || Sbjct 70137 CGGGGTCGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCGACCTCGTCGG 70196 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 || ||||||| || || || || || | || || | ||| |||||||| | ||||| Sbjct 70197 GGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCT 70256 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 | || || ||| || || ||||||||||| || | || | || ||||| | Sbjct 70257 TCTGGTTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGG 70316 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC 116646 | || |||| ||| || || | ||| | | || | | || | || ||| |||| || Sbjct 70317 TCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGAGCGA 70375 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAG 116705 ||||| ||||||| |||||| |||||| || || || ||| || | ||| Sbjct 70376 CCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCCGT-AGCAGTCGGCGAG 70434 Query 116706 CCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765 || || || | || || | ||| ||||| | ||| || |||||||| |||||| Sbjct 70435 ACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCAT 70494 Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825 |||||| || |||| |||||| || ||||||| || || || | || || | || Sbjct 70495 GAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCC 70554 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 116885 || || ||||| || | || || | || ||||| |||||| || || | ||| | Sbjct 70555 GTGGTTCTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGAT 70614 Query 116886 CGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 || | | || | |||| |||| |||||| || || | ||||| ||| Sbjct 70615 GGCAAAGGCACCAGGACGCTTG---TTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTT 70671 Query 116940 AAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA--TAC 116995 ||| || |||||||| || | |||||| | | || |||||| || || || || Sbjct 70672 AAAGACACGAAGCATGGGTACGATACCGTTGCTGA--CGCCATTGGTACCGGCAATGTAG 70729 Query 116996 GAGACTTGTTGGCTCTGACATC-GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 || || || | | || | |||||||| | |||||| || || || ||| ||| Sbjct 70730 GA-ACCGGT--ACCCCGAATGCAGTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGAG 70786 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || ||||| | ||||| || |||| || || ||||||||||| |||| | | | Sbjct 70787 ATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGTG 70846 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 | |||||| || ||| | ||||| || ||||| |||||||||||||| || | Sbjct 70847 ACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAGGGTGGGGGAA 70906 Query 117175 GCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 |||||| | || ||| ||| ||||| | ||||||||| | | || ||||| Sbjct 70907 GCGTGGGT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTC 70965 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 | ||||| ||||| | | || ||||| | ||||| ||||| Sbjct 70966 CTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGG 71010 >seq180 Length=182808 Score = 122 bits (134), Expect = 1e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || || || |||||||||||||| || || |||||| ||||| Sbjct 14569 GCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 14628 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || ||||||||||||||||| Sbjct 14629 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATA 14688 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || || || |||| ||||| |||||||||| Sbjct 14689 CCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGG 14728 >seq200 Length=338114 Score = 111 bits (122), Expect = 2e-19 Identities = 223/328 (68%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || || || |||||| | || | |||| |||||||||||| || || || Sbjct 73263 CTTGAGAAGCGACGGGTAGAAGTGATCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 73204 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || ||||| | || | Sbjct 73203 ACCATCGTGATCCTGATCGGTCATGATCATGACACTGCCGTAACGCAAGCT-GTTGACGT 73145 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | |||| | || || || || ||||| | ||||| ||||| | |||| ||| | Sbjct 73144 CAAGATACTGTTTGCCGTGCTGGAGACCGAGAATCTCCTTGATGGCTTTGATCTCAGCAT 73085 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| || | || || || || ||||| | ||| || || || |||| Sbjct 73084 TCTTCATGATCTGATCGTGAGAGGCCTCACGAACATTGAGAAGCTTACCTCGAAGCGGGA 73025 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 | |||||||| | || | || ||| | || ||| | || ||||| ||||| || | Sbjct 73024 AGACACCGTAATTGTCTCTTCCTACCTCGACGATACCGGACACGGCGAGCGTCTTGGCAG 72965 Query 176895 AATCACCCTCCGTCACGATGAGCGTACA 176922 | ||||| || || | |||||||||||| Sbjct 72964 AGTCACCTTCGGTGAGGATGAGCGTACA 72937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 177708 TCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 177767 || ||| || ||||| | ||||||||||| | | |||||||||||| || || || Sbjct 72058 TCTCGACGGTGAACTCGGTAGAGTAGATGTTGGCGAGCTTGGCACCGTAACCGTT---TC 72002 Query 177768 CACCAACAATTCTCTT---CTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAA 177824 |||| | | ||| || |||||| |||||||| | |||||||||||||||| Sbjct 72001 TACCACCGGTGACCTTGGCCTCGTTGTCGTCGTAGTTGGACGAGGTGAGAAGGTGACCAA 71942 Query 177825 AGGTAAGTTCTGGATTCCAAATACCCTCCTTTTCGTGCAT 177864 || | || |||||| | ||| ||||||||||||||| Sbjct 71941 AGATGAGCTCTGGAATGTAAACCTTCTCCTTTTCGTGCAT 71902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505321134200