Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq180 342 5e-89 seq199 127 2e-24 seq55 127 2e-24 seq112 105 7e-18 seq8 96.9 3e-15 >seq180 Length=182808 Score = 342 bits (378), Expect = 5e-89 Identities = 516/719 (72%), Gaps = 15/719 (2%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTAT-TGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCA 132787 ||||| || |||| |||||| ||| ||||| | || || | | | || | || || | Sbjct 14401 TCGGCGACATACTCAATGTATGTGC-ACATGAGCTTTGCGTTCATG-CCGATCAAACTAA 14458 Query 132788 CCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCC 132847 | ||||| || ||||| | |||||||| ||||||| ||| || ||||| | ||| | Sbjct 14459 CGGGCAGGGCATCGGTCAAGAAGCGTTGTTCGATGGAGACGGCCTCGGTAATGATACTCA 14518 Query 132848 TAACGCGCGCCGCGCTCGGC-CGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCG 132906 |||| | | || | | || || | | | ||| |||| | | || ||||||||| Sbjct 14519 GAACG-GTGTCGGGGTGTGCGCGCTTCTTGAGATGGCTGAAGAGGAGACAGGCAAAGTCG 14577 Query 132907 CAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGG 132966 || | ||| || || | ||| ||||| |||||| ||| || | ||||||||||| Sbjct 14578 GTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGA 14637 Query 132967 CCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACG 133026 || || || |||||||| || |||| |||||| ||| || ||||||| ||||||||| Sbjct 14638 CCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATACCCTCGACG 14697 Query 133027 GCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGC 133086 || || || || || || || ||| | || ||||| ||| | ||||||||| || Sbjct 14698 GCAGCAAAGGCAACGAGACGTTCGGCAAAGGTGGCGCGCTTGTCGCTGATCCAGCGAAGG 14757 Query 133087 GCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGT 133146 ||||| || ||||| || ||||| || || || |||| ||||| ||| | | | | | Sbjct 14758 GCCCAGTCAGCCTTCTCCTTGACTACGGGAATGGTCTCGACGGCGT-CAA-AGAGGAACT 14815 Query 133147 TTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTA 133204 | || ||| ||| | |||||||||||||||| ||| || | || ||||| | Sbjct 14816 CGCGCTGTTCAGGCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGA 14875 Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264 ||||||||| ||| ||||||||||| ||||| || |||||| | |||| || || Sbjct 14876 TGTTCTCCATCATGATCTGAAAGCCGTAGAAGCATCGGGCCTCGGCAGCCTGGACCTC-G 14934 Query 133265 GAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323 |||| ||| |||||||| || || ||||||||||| |||||| ||||||||| ||||| Sbjct 14935 GAGCTGAATCGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGAAGAAGGCG 14994 Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTG 133380 || |||||| |||||| || ||||| |||||||| | | ||||| ||| | | Sbjct 14995 AGGACGTGCGAGATGAAGTGACGCTCATTGTCGTTGAGTTTGTTGTCCCAATCGTGAAGG 15054 Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || || ||||| | ||||||| ||||||| || || || || || ||||||||||| Sbjct 15055 TCTTTTGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCTGCCTTTTTGTACAT 15113 >seq199 Length=93844 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || ||||| || ||||||||| |||| || ||| | Sbjct 53888 AAGATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTCGAGGTGGAGTCT 53829 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || | || |||| ||||| |||||||||||| | || Sbjct 53828 TCCGACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGA 53770 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| || || ||||| || |||| |||||||| ||||| Sbjct 53769 CCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 53710 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || | ||||| || Sbjct 53709 CAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 53671 >seq55 Length=29365 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || ||||| ||||| || |||||| |||| |||||| || || Sbjct 16441 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCTCC 16382 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| || || ||||| ||||||| Sbjct 16381 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCA 16323 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 16322 GCAGCGACTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACTCTCTCCGACTACAA 16263 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| | || || || | ||||| ||| Sbjct 16262 CATTCAGAAGGAGTCTACCCTCCACCTTGTGCTTCGT 16226 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || |||||||| | || |||||| || | Sbjct 16213 ATGCAGATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGTCCTCG 16154 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| || || ||||| | || || Sbjct 16153 GACACCATCGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGATCAG 16094 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 16093 CAGCGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTCTCGGACTACAAC 16034 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || ||| | || || ||| Sbjct 16033 ATCCAGAAGGAGTCTACCCTTCATCTCGTCCTCCGT 15998 >seq112 Length=308905 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || || || ||||| ||| | || |||||| | | Sbjct 97226 ATGCAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97167 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | ||||| ||||| || || ||||||| Sbjct 97166 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 97107 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||||| || |||| || |||||| ||||||||| Sbjct 97106 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97047 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| ||||| | ||||| || Sbjct 97046 ATCCAGAAGGAGTCTACGCTTCA 97024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || || ||||| | || || ||| | | Sbjct 96770 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACGATCACTTTGGAGGTTGAGTCTTCG 96711 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | || || ||||| || || |||| || Sbjct 96710 GACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGATCAG 96651 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||||| || |||| ||||| || | |||||||||| Sbjct 96650 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGCGACTACAAC 96591 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||||| || ||||||| ||| || | || || Sbjct 96590 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGTCTGCGTGGTGG 96544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || |||||| | | Sbjct 96998 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCTTCT 96939 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | || || ||||| |||||| | ||||| Sbjct 96938 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAG 96879 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| || || ||||| || || | ||||| || ||||||||| Sbjct 96878 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGTCTGACTACAAC 96819 Query 38424 ATCCAAAAGGA 38434 || || || || Sbjct 96818 ATTCAGAAAGA 96808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || || || ||||| ||| | || |||||| | | Sbjct 97454 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97395 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || || | || || ||||| || || ||||||| Sbjct 97394 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 97335 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || || || ||||| || |||| || |||||| ||||||||| Sbjct 97334 CAGCGATTGATTTTTGCTGGTAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97275 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| ||||| | ||||| || Sbjct 97274 ATCCAGAAGGAGTCTACGCTTCA 97252 >seq8 Length=117649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTT 38321 |||| || || || ||||| ||| | || || ||| || | |||| | | | | | Sbjct 82261 ACGCCAACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTC 82320 Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 || | || || | ||||| ||||| || ||| ||||||| ||||| || || | ||| Sbjct 82321 AAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCC 82380 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || || ||||| || |||| ||||||||| |||||||||||||| ||||| |||| Sbjct 82381 GGTAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 82440 Query 38442 CTGCATTTGGTGCTGCGT 38459 || || | || || ||| Sbjct 82441 CTCCACCTCGTCCTCCGT 82458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171268220800