Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq113 367 2e-96 seq1 138 1e-27 seq90 107 2e-18 seq204 89.7 7e-13 >seq113 Length=137664 Score = 367 bits (406), Expect = 2e-96 Identities = 767/1137 (67%), Gaps = 8/1137 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 ||||| || ||||| | || ||||| ||||| ||||| |||||||| |||| || || Sbjct 121171 ATGGCAGCCTGGACGGCGGCACCGTAGGCGACGGCCTCGTCGGGGTTGATCGACTTGTTG 121112 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || || |||||| || | || | | | | || | || || || || || || Sbjct 121111 AGCTCACGACCGTTGAAGAAGTCGGTGAGGAGCTTCTGGACCTTGGGAATACGGGTGGAA 121052 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 ||||| || | || || || | || || |||||||| ||||| || || Sbjct 121051 CCACCAACAAGGACAATCTCGTGGACGGAACCCTTGTCGATCTTGGAGTCACGGAGAACC 120992 Query 7202 TTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || || || || || | | || ||| | ||| || || ||||| ||||| || Sbjct 120991 TTCTCAACGGGCTCGATGG-TGTGCGAGAAGAGGTCACCGCAAAGCTCCTCGAAACGGGC 120933 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| ||||| || ||||| || | || ||| | | ||| || || || ||||| || Sbjct 120932 ACGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATCTCGATGGTGGT 120873 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || || | ||| || | || ||||| || |||||||| || || || | |||||| || Sbjct 120872 CTGGGCGGCCGACGAAAGAGTGCGCTTAGCACGCTCACAAGCGGTGCGGAGACGACGGAG 120813 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||||| | || || | || ||||| | || || || ||||| | |||||| Sbjct 120812 AGCACGAGCATTGGTGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTG 120753 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | ||| | || || || |||||||| | || || || || ||||| || || Sbjct 120752 GTTGACGAGACGGTTGTCAAAGTCCTCACCACCAAGATGGGTGTCACCAGCGGTAGCCTT 120693 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| || ||||||||| | |||||| | | | ||| ||||| || ||||| ||||| || Sbjct 120692 GACCTCGAAGATACCTTCCTCAATGGTGAGGAGCGAGACATCGAAGGTACCTCCACCAAG 120633 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 || || ||||| |||||| | || | || | ||||| ||||||||||| ||||| || Sbjct 120632 ATCGAAGATGAGGACGTTCTTCTCACCCTCAGTCTTCTTGTCGAGACCGTAAGCGATGGC 120573 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || || || ||||| || || | | ||| || || | || | | ||||| Sbjct 120572 GGCGGCGGTGGGCTCGTTAATGATTCGCATAACGTTGAGACCCGAGATGATACCGGCATC 120513 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || || || || ||||| ||||| ||||| || ||||| || ||||| |||||| | Sbjct 120512 CTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACAGTGACGACGGCGTCCTT 120453 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 ||| | ||||| || | || ||| | || ||| ||| || ||||| || || Sbjct 120452 GACGGTGCCGCCGAGGTAGGCCTCGGCGGTCTCGCGCATCTTGAGGAGGACCATGGAGGA 120393 Query 7801 AATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 |||||||| | | || ||| | ||||| || | || | ||| ||| || Sbjct 120392 GATCTCTTCGGGGGTGAAGGTCTTCTTCTCACCCTTGTACTCGATGCGGATCTGGGGCTT 120333 Query 7861 ATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG 7920 || | ||| | | |||| | | ||| | ||||||||| ||||||| Sbjct 120332 ---GCCACCGACGGAGGTGACCTCGAATGGCCAGTGCTTCATATCGGACTGGACCTCGGC 120276 Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980 ||| ||||| | ||||| |||||||| || || || || || || | |||||||| Sbjct 120275 GTCATCGAACTTGCGACCGATGAGACGCTTGGCGTCGAAGACGGTATTGTGAGGGTTCAT 120216 Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040 ||| |||||||| || || || ||||| ||||| || | | || || || ||||| Sbjct 120215 GGCGACCTGGTTCTTGGCAGCATCTCCGATGAGACGCTC-TGA--ATCAGTGAAGGCGAC 120159 Query 8041 GTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTG 8100 || || || || || || || || |||||||| || |||| || || ||||| || || Sbjct 120158 ATATGAAGGAGTGGTACGGTTACCCTGGTCGTTGGCGATAACCTCGACACGGTCATTCTG 120099 Query 8101 CCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCAT 8157 ||| ||| |||| || || || || || || | ||| |||||||| || | ||||| Sbjct 120098 CCAAACGGCGACACAGGAGTAGGTAGTACCGAGATCGATACCGATGGCCTTGGTCAT 120042 >seq1 Length=364348 Score = 138 bits (152), Expect = 1e-27 Identities = 456/701 (65%), Gaps = 36/701 (5%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || || || |||| ||| Sbjct 278191 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCAAGCACCTCGAAGACACCA 278132 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | ||||||||| || ||||| ||||| || || | | | | Sbjct 278131 GAGTCAATCGAGAGAAGCGAAACATCGAAGGTACCTCCACCAAGATCGTAGACAATGATC 278072 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | ||| |||| || ||| ||||||||||| ||||| || || || || || || Sbjct 278071 TGGGACTCGCCGTCCTT---CTTGTCGAGACCGTAAGCGATGGCGGCAGCGGTGGGCTCG 278015 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||| || || ||| |||||||| || || | || || || || || || || Sbjct 278014 TTGACAATTCGGAGGACGTTGAGGCCAGCGATGGTACCAGCGTCCTTGGTGGCCTGACGC 277955 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| ||||| || ||||| |||| ||||| || | || || Sbjct 277954 TGAGCGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTGGGTGACCTTGTGGCCAAGG 277895 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||||| || |||||||| | |||| ||| || | | Sbjct 277894 TAAGCCTCGGCGGTCTCCTTCATCTTCTGGAGAACCATAGCCGAAACCTCCTCGGGGGTG 277835 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAAT------CATGG-GTTTATC-CG--C 7866 || ||| |||| ||||| | || | || | ||| ||| || || Sbjct 277834 AAGACCTTCTTTTCGCCGTTTACGGTGACCTGGATAGCGGGCTTGGAGTTCTTCTCGACG 277775 Query 7867 AGC--ACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCC 7924 ||| ||||| ||| | | || ||| | ||| |||| | | || Sbjct 277774 AGCTTGAAGGGGAGGTGCTT----GGC--GTCCTTCTTGAGGTC--GGAC----TCGCCC 277727 Query 7925 GAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCT 7984 |||| | || || ||||| || || ||||| | ||||||| ||||||| ||| Sbjct 277726 ---CACTTGCGACCAATGAGACGTTTGGCGTCAAAGATGGTGTTTTCGGGGTTCTGGGCG 277670 Query 7985 GTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTAC 8044 | |||||||| || ||||| |||| ||||| ||| || || ||||||||| Sbjct 277669 GCCTGGTTCTTGGCAGCGTCTCCGACGAGACGCTCA------GGGGTGAAGGCGACGTAC 277616 Query 8045 GATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAG 8104 || ||||| | || || ||||||||||| | || || || || ||| |||| | Sbjct 277615 GAGGGGGTAATACGGTTTCCTTGGTCGTTGGTGATGATCTCGACACGGCCGTTGACCTGT 277556 Query 8105 ACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| ||||| || || ||||| | ||| ||||| || Sbjct 277555 GCACCGACACACGAGTAGGTAGTTCCAAGATCGATACCAAT 277515 >seq90 Length=228057 Score = 107 bits (118), Expect = 2e-18 Identities = 302/461 (66%), Gaps = 6/461 (1%) Strand=Plus/Minus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || || || ||||| |||||||| ||||| || | ||| || Sbjct 189768 GCATCCTTGGTGGCGAGACGCTGAGAGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCC 189709 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| |||| | | || ||||| || ||||| ||||| || ||||| Sbjct 189708 TTCTTGACCTCCTTGCCGATCTTGGCCTCGGCGATCTCCTTCATCTTGGTGAGGACCATG 189649 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || ||||| | | | ||||| || || || ||| || ||| || || | | Sbjct 189648 GAGGAGATCTCCTGGGGAGAGAACTGCTTGGTCTCGCCGAGGTAAGAAACCTCGATGAAG 189589 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | || || | | | ||| | | ||| || | | ||| Sbjct 189588 GGGG-AGCCGT--CCTTGTCAATGACGGTGAAGGGCCAGTGCTGCATGTCCTTCTTGACA 189532 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| |||||||| || || || || || | |||||| Sbjct 189531 TCGGGGTCATCGTATCGGCGACCGATGAGACGCTTGGCGTCGAAGACGGTCTGCTTGGGG 189472 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || || || ||||| || | || || || Sbjct 189471 TTCATGGCAGCCTGGTTCTTGGCAGCATCACCAATGAGACGCTC---GCTCTCGGTGAAA 189415 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 || |||||||| ||||| || || || || ||||| || || || || || || || ||| Sbjct 189414 GCAACGTACGAGGGGGTGGTGCGGTTACCCTGGTCATTGGCGATGATCTCGACACGCTCG 189355 Query 8096 TTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 || ||| ||||| || || || || || || | ||| Sbjct 189354 TTGACCCACCAACCGACACAGGAGTAGGTAGTACCGAGATC 189314 >seq204 Length=182939 Score = 89.7 bits (98), Expect = 7e-13 Identities = 203/303 (67%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC- 7515 |||||||| |||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 97058 TCGAAATCCTCACCACCGAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCC 96999 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | | | | ||| | ||| || ||||| || |||| ||| || | | | Sbjct 96998 TTCTGCA-TCTCAAGAATCGAGATATCGAAAGTACCTCCTCCCAAGTCGAAGACGGCAAT 96940 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || |||||| || |||||||||| |||| || || || || || || Sbjct 96939 AACCGACGAGTCGTCACGGT------CGAGACCGTAGGCGAGGGCGGCAGCGGTGGGCTC 96886 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || | ||||||| || || || || || | | || || || || || || || Sbjct 96885 GTTGATGACACGAAGAACGTCGAGACCGGCGATGGCACCGGCGTCCTTGGTAGCCTGACG 96826 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| ||||| ||||| || ||||| || | ||| |||| | |||| |||| ||||| Sbjct 96825 CTGCGAGTCGTTGAAGTAAGCGGGGACAGTGATGACGGCGTGCTTGACAGTCTTGCCGAG 96766 Query 7756 ATA 7758 || Sbjct 96765 GTA 96763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130854905800