Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq241 280 2e-70 seq180 136 5e-27 seq200 131 2e-25 >seq241 Length=120793 Score = 280 bits (310), Expect = 2e-70 Identities = 815/1234 (66%), Gaps = 33/1234 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || | |||||||| || | || || || || Sbjct 71010 CCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATCCACGGCCAGGACATCGAGAGTGCC 70951 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || | |||||| | || |||||||| Sbjct 70950 ATCGAGACCTACAACCTCATGTCGCAAAAGTACTTT-ACCCACGCTTCCCCCACCCTCTT 70892 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || |||||||| | | | ||||| || Sbjct 70891 CAACGCCGGTACTCCCCACCCACAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGA 70832 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | |||||||||| |||||||| || ||| ||||| ||| || || Sbjct 70831 CTCGATCGACGGCATTTACGACACTCTCAAGACCTGCGCCATGATCTCCAAGACCGCCGG 70772 Query 111851 TGGTATCGGGATGCACATCCA-TGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 ||| || || | ||||||| || || | | || || || || || ||||| Sbjct 70771 TGGCATTGGTCTCAACATCCACTGCATTCGGGGT--ACCGGT-TCCTACATTGCCGGTAC 70715 Query 111908 AAATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 ||||| |||| | ||||| | || |||||||| || |||||| ||| || ||| Sbjct 70714 CAATGGCG--TCAGCAACGGTATCGTACCCATGCTTCGTGTCTTTAACAACACGGCTCGC 70657 Query 111966 TATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCA 112019 || || |||| | ||| | |||| | || | || |||| ||||||| Sbjct 70656 TACGTCGACCAGGGTGG---TAACAAGCGTCCTGGTGCCTTTGCCATCTACATTGAGCCT 70600 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||| ||||| || | |||||||| || ||||| ||||| || | ||||||| | Sbjct 70599 TGGCACTCGGATGTCTTTGAGTTCCTCGACCTGCGTAAGAACCACGGAAAGGAGGAGGTG 70540 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || ||| || ||||||| ||| |||||| | || ||||||||||||||||| |||||| Sbjct 70539 CGTGCCCGAGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTTGAG 70480 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| || | ||||| ||| | || || || || ||||||||| |||| | Sbjct 70479 CAGAACGGTGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTGCTAC 70420 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-AC 112258 || || || ||||| |||||| ||||||| || |||| | | ||| || Sbjct 70419 GGCGACGAATTTGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCA-AGCGCAC 70361 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || | || | || | | ||| | || || ||| |||| || |||||||| |||| | Sbjct 70360 CGT-CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACC 70302 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| ||||| || | ||||| || || ||||| | || | Sbjct 70301 CCTTCATCCTCTACAAGGACGCTGCCAATCGCAAGAGCAACCAGAAGAACCTTGGCACCA 70242 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | ||||||||||| || || ||| | || | | | | || ||| || | Sbjct 70241 TCAAGTGCTCCAACCTCTGCACCGAGATCATCGAGTACAGTGCCCCCGACGAGGTCGCCG 70182 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | || ||||| || || ||||||||||||| | | | || || | || || | | | Sbjct 70181 TCTGCAACCTTGCCTCGATCGCTCTCCCCACCTTTATCGACCCCGTCACCAAAATCTACG 70122 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 ||| | |||||||| || | || | || || ||| | |||| | || | Sbjct 70121 ATTTCAAGCGTCTCCACGAGGTCGCCAAGGCCATCTGCAAGAACTTGAACAAGATCATCG 70062 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | || ||||| ||| ||||| | || || ||| | |||||||| || | Sbjct 70061 ACATCAACTACTATCCCGTCGAGGAGGCTCGCAGGTCCAACATGCGTCACCGTCCCATCG 70002 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 112675 || |||||||||| |||||||| || | ||||| || | | || |||| ||||| || Sbjct 70001 GTATCGGTGTCCAGGGTCTCGCTGACGCCTTCATGATCATGG--GCTACGCCTTTGAGTC 69944 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || | |||| | || |||||||| || || |||||||| || || Sbjct 69943 GCCCGAGGCTCGTCGTCTTAATGTTCAGATCTTTGAGACCATCTACCACGCCGCCCTCGA 69884 Query 112736 GGCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 |||| || | ||| |||| ||| | || | || || |||| || || || || Sbjct 69883 -GCGATCGTGC-GAGCTGGCTCAGGAGCACGGCACCTACGAGACCTATGCCGGCTCGCCC 69826 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 ||||| || || | |||||| | || ||||||| Sbjct 69825 GCTTCGCAGGGTGAGCTTCAGTACGACATGTGGG 69792 >seq180 Length=182808 Score = 136 bits (150), Expect = 5e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| || || ||| | || ||||| || |||||||||||||||||||| || | Sbjct 14728 CCTTTGCCGAACGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGT 14669 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | | || | |||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 14668 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACG 14609 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||||| ||||| || || || ||| || ||||| Sbjct 14608 AGCTCATCTCCCGTGATGAAGGCCTTCACACCGACTTTGC 14569 >seq200 Length=338114 Score = 131 bits (144), Expect = 2e-25 Identities = 207/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| |||||||||||||| || ||||| |||| ||| ||| ||||||||||||| | Sbjct 73229 TTGATGATGAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGTCATGATCATGACA 73170 Query 176783 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 176841 | || || || ||||| | || || |||| | || || || || ||||| | || Sbjct 73169 CTGCCGTAACGCAAGCT-GTTGACGTCAAGATACTGTTTGCCGTGCTGGAGACCGAGAAT 73111 Query 176842 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAAC 176901 || ||||| | |||| ||| || ||| ||| | |||||| |||||||| Sbjct 73110 CTCCTTGATGGCTTTGATCTCAGCATTCTTCATGATCTGATCGTGAGAGGCCTCACGAAC 73051 Query 176902 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAG 176961 ||| | ||| || ||||| |||||||||||||| | || | || ||| | || Sbjct 73050 ATTGAGAAGCTTACCTCGAAGCGGGAAGACACCGTAATTGTCTCTTCCTACCTCGACGAT 72991 Query 176962 ACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA 177015 ||| | || |||||||| || ||||| ||||| || || | |||||| ||||| Sbjct 72990 ACCGGACACGGCGAGCGTCTTGGCAGAGTCACCTTCGGTGAGGATGAGCGTACA 72937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740498976400