Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq241 210 3e-49 seq18 132 6e-26 seq180 82.4 9e-11 >seq241 Length=120793 Score = 210 bits (232), Expect = 3e-49 Identities = 1095/1723 (64%), Gaps = 51/1723 (3%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||| | |||||||||||| ||||||| ||| || || || |||||||| ||||| Sbjct 69379 GTTGAGCGACTGAGACTGGCAGATGAATGCACCTCGGTCGGCAGCCATGTCAATGATGGC 69438 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| ||||| || ||||| || |||||||| | ||||||||| ||||| ||| | Sbjct 69439 CTTCTGGCTGATCTCCCATACGGTCTTGTAGAGCTTCTTGATACGGTCGGGGATGCCGGG 69498 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGA-CCAGA 109678 | ||| || || || ||||| | ||| | | |||||| | ||| ||| | Sbjct 69499 AACGTTCTGGATCGAACCACCGTGGGCAATGATGCGGTTCTTCATGG-TGTCGTTCCACA 69557 Query 109679 GACCGACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCA 109734 ||| || ||| ||| |||| || |||||||| || || || Sbjct 69558 AACCTTGCTCAACGAGCTCGCGGAGCAACCAGGGA----TTGACCACCTGGAACTCGCCG 69613 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 || ||| || || ||| ||||| | ||||| ||||| || ||||| ||| || Sbjct 69614 GCGAGTACACGACGAGAGTAAATGTTGGAAGTGTAAGGTTCAAAGCACTCGTTGAAACCG 69673 Query 109795 AGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC- 109853 || || || || || || || ||||| || || | ||| || || || ||||| Sbjct 69674 AGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAGGAGCGAATTGCGCAGACCG 69733 Query 109854 --CTTCG---TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA 109908 ||| | |||| || | | || || |||| || | | | | || Sbjct 69734 TGCTTGGCAATCTTGGCCT--TGAGGC----CGGCCCAGTCCCAGAGGTC-CGAAGGG-- 69784 Query 109909 GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAA 109968 || |||| |||||| || ||||| |||||| | ||| || || || | Sbjct 69785 GTGACACC---CCACATGTCGTACTGAAGCTCACCCTGCGAAGCGGGCGAGCCGGCATAG 69841 Query 109969 CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATAC 110028 ||||||| | || | ||| |||| |||| | || ||| || || || || || Sbjct 69842 GTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGCTCGAGGGCGGCGTGGTAG 69901 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGG-GAAGACC 110087 || |||||||| || ||| |||| | | |||| ||| | || |||| | || || Sbjct 69902 ATGGTCTCAAAGATCTGAACATTAAGACGACGAGCCTCGGGCGACTCAAAGGCGTAGCCC 69961 Query 110088 ACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 | | | | || | || || |||||||| ||||||| ||| ||||| || || ||| Sbjct 69962 ATGATCA-TGAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGGTGACGCAT 70020 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| || | ||||| || ||||| || ||||| |||||||| | || | || Sbjct 70021 GTTGGACCTGCGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGATCTTGTTCAAGTT 70080 Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT 110267 ||| | | ||| | || || ||||| | | ||||| | |||| || | Sbjct 70081 CTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGATTTTGGTGACGGG 70140 Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327 | || | | |||||||||| || || ||||| ||||| || | |||||| | | Sbjct 70141 GTCGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGC 70200 Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 |||| || | || || || || | |||||| | ||| ||| || | ||||||||| Sbjct 70201 ACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTG 70260 Query 110388 ATTCGATTTG-GAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 || ||| || | ||| || ||||| ||||| ||| | ||| |||| || || |||| Sbjct 70261 GTTGCTCTTGCGATTGGCA-GCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCT 70319 Query 110447 GTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCG-TTAGCGAGACC 110504 | |||| ||| ||||| | ||| | | || | ||| ||| || ||| || | | |||| Sbjct 70320 GCGACTCGAGGATGGCGTACCAGAGCTTCTG-GGCCTTGACGGT-GCGCTTGGAGCGACC 70377 Query 110505 TTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564 || ||||||| ||| | ||||||||| | ||||| || | ||||| Sbjct 70378 CTCGGCCTCGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACC 70437 Query 110565 CTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624 || || ||| || | ||| ||||| | || || |||||||||||||||||| Sbjct 70438 GGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAA 70497 Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684 || || || | ||| | || |||| || || ||| ||| |||| || | || || Sbjct 70498 GAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTG 70557 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 ||| || || || | || || | || |||||||||||| || || | |||| || Sbjct 70558 GTTCTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGC 70617 Query 110745 GATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 | || || | |||| ||| |||||| || ||||| || ||| || || Sbjct 70618 AAAGGCACC---AGGACGCTTGTTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTTAAA 70674 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGA--CCATTTGTACCCCTAATTCTGGAC 110856 ||| | ||||| || | || || | | ||| ||||| ||||| ||| ||| Sbjct 70675 GACACGAAGCATGGGTACGATACCGTTG--CTGACGCCATTGGTACCGGCAATGTAGGAA 70732 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 | | |||||| |||||| | | |||||| ||||| || ||| || Sbjct 70733 CCGGTACCCCGAATGCAGTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGAGATCATG 70792 Query 110917 GCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAG 110975 || || ||| |||| || | ||||| || || ||||| || |||| ||| | || Sbjct 70793 GCGCAGGTCT-TGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGTGACGAG 70851 Query 110976 AAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATG 111035 || || || || | ||| || | || || || || |||||||| || || | || || Sbjct 70852 GAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAGGGTGGGGGAAGCGTG 70911 Query 111036 AATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095 | || ||| ||||| |||||| || |||| || | || | || Sbjct 70912 GGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTCCTGGCC 70971 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 ||| ||||||| ||||| ||||||| ||| | || || |||| | ||| || | Sbjct 70972 GTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGTTCGGCGACCTTGCCGTT 71031 Query 111156 AACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAG 111198 | ||| | ||||| ||| |||||||||| ||||||| Sbjct 71032 GATACGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAAACCAAAG 71074 >seq18 Length=157156 Score = 132 bits (146), Expect = 6e-26 Identities = 334/496 (67%), Gaps = 19/496 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| ||||| || || | || || |||| || | ||| ||||| ||| || Sbjct 155654 CGGTCGAATCGACCAGGTCGCATCAGTGCGGCATCGAGGACGTCGGGTCGGTTGGTACCG 155595 Query 11563 GCAATGACTACAA--TGCCAGTCT-CATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| ||| || | ||| ||| | | ||||||||||||| | ||| | || | Sbjct 155594 GCAAGGACAACGACGTGC---TCTTCGGTTCCGAAACCGTCCATCTGGACGAGCAACTCG 155538 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCA---TACCACCTGCCGAACGCTTCTTA 11676 |||| || ||| || || ||||| | | | |||||| ||| |||| Sbjct 155537 TTGAGGGTTGATTCGCGTTCGTCGTTACCGCCAAAGTTGCCACCTTTACCACGGCTCTTG 155478 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 |||| |||||| |||||||| ||||| | ||| || || || | | || | ||| | Sbjct 155477 CCGATAGCGTCGATCTCATCAATGAAGATGATGCAAGGAGCGT-GCTTCTTGGC-GTTGG 155420 Query 11737 AAAAGTT--CACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||| | | || || || | | |||||||| || ||||| || || || | | Sbjct 155419 CAAACATGTCTCGAACTCGACTGGGACCAACACCGACAAACATTTCGACAAACTCGGAAC 155360 Query 11795 CAGAACACTGAATG-AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | || || ||| | || |||||| | |||||||||| | || || || | ||| Sbjct 155359 CCGAG-ACGGAAAGGAAAGGAACACCCGCCTCACCAGCGGTAGCCTTGGCAAGCAACGTC 155301 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC 11911 ||||| ||||| |||| ||| | ||| | ||| |||||||||||||||||||| |||| Sbjct 155300 TTACCGGTACCGGGTGGACCGGAGAGGATGGCACCACGGGGGATCTTGGCACCGAGCTTC 155241 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971 ||| ||||||||||||||||||| |||| |||| | ||| |||||||| Sbjct 155240 --TCGTACTTTTCAGGCTTCTTGAGGAAGTTGACAAACTCCATGATTTCTTCCTTGGCCT 155183 Query 11972 AGTCGATACCCTCAAC 11987 ||| ||||| |||| Sbjct 155182 CGTCCATACCGGCAAC 155167 >seq180 Length=182808 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| |||||||| || ||||||||||| || |||| || || Sbjct 14568 GGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 14627 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||||| || ||||| |||||||| Sbjct 14628 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGAT 14687 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| || || || || | ||||| || || |||||| | | |||||| || Sbjct 14688 ACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGC-AAAGGTGGCGCGCTTGTCGCTGA 14746 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695 ||| || ||||||| ||||| Sbjct 14747 TCCAGCGAAGGGCCCAGTCAGCCTT 14771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974196261000