Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq241 197 2e-45 seq180 102 1e-16 >seq241 Length=120793 Score = 197 bits (218), Expect = 2e-45 Identities = 830/1297 (64%), Gaps = 25/1297 (2%) Strand=Plus/Plus Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 ||||||| || | |||||| | || || || | ||| || || || | ||||| |||| Sbjct 69792 CCCACATGTCGTACTGAAGCTCACCCTGCGAAGCGGGCGAGCCGGCATAGGTCTCGTAGG 69851 Query 106155 AACCTTGGGCTTCAGCCAATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCA 106213 || || | | ||||| || || | |||| || |||| ||||| || ||||| ||| Sbjct 69852 TGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGCGTGGTAGATGGTCTCA 69910 Query 106214 AAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA 106273 ||||| || |||| | || || || ||||| ||||||| | || Sbjct 69911 AAGATCTGAACATTAAGACGACGAGCCTCGGGCGACTCAAAGGCGTAGCCCATGATCATG 69970 Query 106274 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 106333 || | || |||||||| || ||||| | ||| || || | ||| ||||| || ||| | Sbjct 69971 AAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGGTGACGCATGTTGGACCTG 70030 Query 106334 CGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA 106393 || || ||| |||||||| | || |||| |||| ||| | || ||| | Sbjct 70031 CGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATG 70090 Query 106394 ATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 106453 ||| | || || || || | |||| | | || | | || | | Sbjct 70091 GCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGATTTTGGTGACGGGGTCGATAAAG 70150 Query 106454 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513 | || || ||||| || || | ||||| || || ||| || | ||||||| Sbjct 70151 GTGGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCG 70210 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | || || || || | |||||| | ||| || || || | ||||| ||||| ||||| Sbjct 70211 ATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTG 70270 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 ||| || ||||||||||| ||| |||| | || ||||| ||||| |||| ||| Sbjct 70271 CGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGG 70330 Query 106634 ATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTA 106692 || || | ||| | | || | | || | || || |||| || ||||| |||||||| Sbjct 70331 ATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGAGCGACCCTCGGCCTCGTA 70389 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 106752 |||||| ||||| || || || ||||| |||||| || || || Sbjct 70390 GCGCTCGTAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTT 70449 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || || | || ||||| | ||| || |||||||| ||||||||| || || || | Sbjct 70450 GGGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGGAC 70509 Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||| |||| | ||||| |||| || |||| || | || ||||| || | Sbjct 70510 CCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTTCTTACGCAG 70569 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 || |||||||| | || ||||| |||||| ||||||| |||| || | | || Sbjct 70570 GTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC--- 70626 Query 106933 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986 ||||| ||| | || | || ||||| || ||| |||||| || |||||||| Sbjct 70627 AGGACGCTTGTTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCAT 70686 Query 106987 TGGAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG--CTC 107042 || | ||||| | |||| ||||| || || ||| || | || | | Sbjct 70687 GGGTACGATACCGTTGCTGA--CGCCATTGGTACCGGCAATGTAGGA---ACCGGTACCC 70741 Query 107043 TCACATCA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | || ||||||| | ||||| || || || ||| ||||| || || | Sbjct 70742 CGAATGCAGTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTC 70801 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | ||||| | || || |||| ||| ||||| ||||| ||| || ||||| || Sbjct 70802 TTGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGAC 70861 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 || | ||| || || ||||| || ||||||||||| || | ||||| | || || Sbjct 70862 GAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAGGGTGGGGGAAGCGTGGGT-AAAGTA 70920 Query 107222 C-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 | ||| ||||| || ||| ||||| | | || || ||||| | |||||||| || Sbjct 70921 CTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTCCTGGCCGTGGATACC 70980 Query 107281 GATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTG 107340 | || |||||||| | ||||| ||||| ||| || |||| | || || | Sbjct 70981 AACAGCAACACGCATGAGCATGTGCTGGGGACGTTCGGCGACCTTGCCGTTGATACGGAG 71040 Query 107341 AAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAA 107377 || ||| ||| ||||| |||| ||||||| || Sbjct 71041 GAGGTAGGAGCGCTCGAGGGTCTTGAAACCAAAGAAA 71077 >seq180 Length=182808 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| || || ||||| ||||| || || || || |||||| || || Sbjct 14568 GGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 14627 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | ||| || || ||||||||||| Sbjct 14628 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGAT 14687 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 |||||| || ||||| |||| || || ||||| |||| Sbjct 14688 ACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGG 14728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978993183800