Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02]
245 sequences; 20,691,077 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq199 152 1e-31
seq112 152 1e-31
seq55 147 5e-30
seq8 131 4e-25
>seq199
Length=93844
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || |||||||| || || || ||||| || | ||| || | || || |||
Sbjct 53677 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 53736
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||||||||| || ||||| || ||||| || || ||||| ||
Sbjct 53737 AGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGG 53796
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| ||||||||||| ||| ||||| || ||||| | |||||
Sbjct 53797 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTA 53856
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || || || | |||||
Sbjct 53857 CCCGTAAGGGTCTTCACAAAGATCTGCAT 53885
>seq112
Length=308905
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| | ||| |||||||| || ||||| || || || ||||| || | || ||||
Sbjct 97008 GAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCG 97067
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|| || ||||||||||| || || ||||| || || || ||||| ||||| || || ||
Sbjct 97068 TCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTC 97127
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
||||| ||||| || |||||| || |||||||| || ||| || || ||||||||
Sbjct 97128 CTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGT 97187
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || |||| ||| |||||||| | |||||
Sbjct 97188 AATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226
Score = 147 bits (162), Expect = 5e-30
Identities = 164/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| | ||| |||||||| || ||||| || || || ||||| || | || ||||
Sbjct 97236 GAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCG 97295
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|| || |||||||||||||| || || || | ||| || ||||| ||||| || || ||
Sbjct 97296 TCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTC 97355
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || ||||| || |||||| || |||||||| || ||| || || ||||||||
Sbjct 97356 CTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGT 97415
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || |||| ||| |||||||| | |||||
Sbjct 97416 AATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454
Score = 145 bits (160), Expect = 2e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| ||||||||||| || ||||| || || || ||||||||| || || | |||||
Sbjct 96330 CAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATC 96389
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
|||||||||||||| || ||||| | ||| || ||||| ||||| || || || || ||
Sbjct 96390 CTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATC 96449
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||||| || |||||| || |||||||| || ||| || || ||||| || | |||
Sbjct 96450 CTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGT 96509
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || ||||| || || || || | |||||
Sbjct 96510 CTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| ||| || ||||| || ||| |||||| ||||| ||||| || | ||||| |
Sbjct 96781 AGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGG 96840
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||||||||||||||| || ||||| || ||||| || ||||| || |||||||| ||
Sbjct 96841 CCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCC 96900
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || ||||| || |||||| || |||||||| || ||| || ||||| | |||
Sbjct 96901 TTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTG 96960
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || || | || || || || | |||||
Sbjct 96961 ATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || || || ||||| ||| ||||| | || |||||
Sbjct 96562 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCA 96621
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||| | ||| || || || ||||| || || || || || |||
Sbjct 96622 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGGATACCCTCCTTATCCTGA 96681
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || || ||||||||| || || || | || | |||||||
Sbjct 96682 ATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACCTCCAAAGTGATCGTCTTT 96741
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | || || || || | ||||||
Sbjct 96742 CCTGTGAGTGTCTTGACAAAGATTTGCAT 96770
>seq55
Length=29365
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || ||||| || ||||| ||||| |||| ||||| | ||||| |||
Sbjct 16233 ACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATCCTCG 16292
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||||| ||||| ||||| || ||||| || ||||||||||| ||||| ||
Sbjct 16293 AGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGG 16352
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || ||||| || || || || ||||| | |||||
Sbjct 16353 ATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTCTTG 16412
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || ||||| || | |||||
Sbjct 16413 CCGGTGAGGGTCTTTACAAAGATCTGCAT 16441
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || ||||| || ||||| || || || ||||| || | ||||||| || || |||
Sbjct 16005 ACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCG 16064
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || || || || || || || ||||||||||| ||||| |||
Sbjct 16065 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGA 16124
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || ||||||||||| || || ||||| || | |||||
Sbjct 16125 ATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTA 16184
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||||| || || || | |||||
Sbjct 16185 CCGGTCAAAGTCTTGACAAAGATCTGCAT 16213
>seq8
Length=117649
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || || ||||| || | || || | || || |||
Sbjct 82451 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 82392
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| |||||||| || || || ||||| || || || || || ||||| |||
Sbjct 82391 AGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGA 82332
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || ||||||||||| ||||| |||||||||| |||||
Sbjct 82331 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTA 82272
Query 195112 CCTGT 195116
|||||
Sbjct 82271 CCTGT 82267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109478117267915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |