Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq55 125 6e-24 >seq55 Length=29365 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| || || || || ||||| || | || ||||| | || || | || Sbjct 16010 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCGAGCTG 16069 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| ||||| || ||||||||||| || || ||||| || Sbjct 16070 CTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGAATCTT 16129 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | || || |||||||||| || || ||||| Sbjct 16130 GGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTACCGGT 16189 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||| |||||||| Sbjct 16190 CAAAGTCTTGACAAAGATCTGCAT 16213 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || || ||||| |||| || ||| | |||| || | ||| Sbjct 16239 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATCCTCGAGCTGC 16298 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | ||||| || ||||| ||||||||||| || || || || || Sbjct 16299 TTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTG 16358 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| || |||||||| Sbjct 16359 GCCTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTG 16418 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| |||||||| Sbjct 16419 AGGGTCTTTACAAAGATCTGCAT 16441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277216737465