Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq112 105 5e-18 seq199 86.0 5e-12 >seq112 Length=308905 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | || || ||||||||||| ||||| ||||| ||||| ||| | || Sbjct 96781 AGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGG 96840 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || |||||||| || || | ||||| ||||||| Sbjct 96841 CCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCC 96900 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || | ||| || |||| || Sbjct 96901 TTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTG 96960 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 96961 ATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || || || |||| |||| || | |||| Sbjct 97024 TGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGC 97083 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| || || ||||| || || | || | ||||||||||| |||||| Sbjct 97084 TTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTG 97143 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||| ||||| | ||||| || || || ||| Sbjct 97144 GCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTC 97203 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||| ||||| ||||||||||| Sbjct 97204 AGAGTCTTTACGAAAATCTGCAT 97226 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || |||||| | || ||||| || | || || || ||| || || || |||||||| Sbjct 96312 GTTGCCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATC 96371 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 || | || | || || | ||||||||| ||||| |||| |||||| || || | Sbjct 96372 GCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGG 96431 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 || | |||||||| || |||||| || ||| | | | || || | ||| Sbjct 96432 AGGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTC 96491 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||| ||||| || || ||||| || || |||||||||||||| Sbjct 96492 GACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 >seq199 Length=93844 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || || || | || |||| || | |||| Sbjct 53683 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 53742 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 |||||||| || || |||||||| || || | ||||| ||||||||||| ||||| Sbjct 53743 TTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTG 53802 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||||||||| | || || || || ||||| Sbjct 53803 GCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTA 53862 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 | || || ||||| ||||||||| || || Sbjct 53863 AGGGTCTTCACAAAGATCTGCATCTTGAGT 53892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936462544135