Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq241 398 1e-105 seq180 219 8e-52 >seq241 Length=120793 Score = 398 bits (440), Expect = 1e-105 Identities = 1210/1841 (66%), Gaps = 73/1841 (4%) Strand=Plus/Plus Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 || || | ||| || |||||| |||| ||||||| | | ||| || |||||||| Sbjct 69371 AGGTGGATGTTGAGCGACTGAGACTGGCAGATGAATGCACCTCGGTCGGCAGCCATGTCA 69430 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 ||||| | ||||| || |||||| ||||||||| ||| | |||| || ||| Sbjct 69431 ATGATGGCCTTCTGGCTGATCTCCCATACGGTCTTGTAGAGCTTCTTGATACGGTCGGGG 69490 Query 212808 AAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCC 212864 | |||||| | |||||| | || || | ||| ||| | | | | |||| Sbjct 69491 ATGCCGGGAACGTTCTGGATCGAACCACCGTGGGCAATGATGCGGTTCTT---CATGGTG 69547 Query 212865 TCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTG-----ACCAGGTGAGGGTTGACTATCT 212919 |||||||| | || || || | || | | |||||| | ||||| | || Sbjct 69548 TCGTTCCACAAACCT-TGCTCAACGAGCTCGCGGAGCAACCAGG----GATTGACCACCT 69602 Query 212920 GGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCT 212979 |||| || || | ||| || | | ||||| ||| |||||||| || || | || || Sbjct 69603 GGAACTCGCCGGCGAGTACACGACGAGAGTAAATGTTGGAAGTGTAAGGTTCAAAGCACT 69662 Query 212980 CGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGT 213039 ||||| || |||||||| || ||| || ||||| || || | ||||| | Sbjct 69663 CGTTGAAACCGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAGGAGCGAAT 69722 Query 213040 TCCTCACTCCGTGCTCGCCGATGA-GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGAC 213098 | | || ||||||| | | || ||| || || | ||||||||||| | | || Sbjct 69723 TGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGGC-CGGCCCAGTCCCAGAGGTCCGAA 69781 Query 213099 AGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTG 213158 || | || ||||||||| |||| ||| | | ||| | |||| Sbjct 69782 GGGG---------TGACACCCCACATGTCGTACTG-AAGCTCACCCTGCGAAGCGGGCGA 69831 Query 213159 CCCTGG-TAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGC 213217 || | || | ||||| ||| ||||||| ||||||||||| || || ||||| Sbjct 69832 GCCGGCATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGCTCGAGGGC 69891 Query 213218 AGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA 213277 |||| ||||||||| ||||| |||| || || ||||| || ||| | || Sbjct 69892 GGCGTGGTAGATGGTCTCAAAGATCTGAACATTAAGACGACGAGCCTCGGGCGAC-TCAA 69950 Query 213278 GGGCAT----CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGG 213333 ||| | ||| || | | ||| | ||||| || |||||||| ||||| ||||||| Sbjct 69951 AGGCGTAGCCCATGAT-CAT--GAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGG 70007 Query 213334 GTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATG 213392 | | ||| | || ||| ||| || |||| |||||| | ||| || ||||| ||||||| Sbjct 70008 GACGGTGACGCATGTTGGACCTGCGAGC-CTCCTCGACGGGATAGTAGTTGATGTCGATG 70066 Query 213393 ATCTTGTTGAGGTT---GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTG 213449 |||||||| | ||| || | ||||| |||| ||| | | || || | || | Sbjct 70067 ATCTTGTTCAAGTTCTTGCAGATGGCC---TTGGCGACCTCGTGGAGACGCTTGAAATCG 70123 Query 213450 AACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACG 213509 | | | | || | | ||| || || ||||| ||| |||||||| ||| Sbjct 70124 TAGATTTTGGTGACGGGGTCGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTTGCAGACG 70183 Query 213510 GCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATG 213569 || ||||| | | | | ||||||| |||||||||||||| |||||| ||| |||| Sbjct 70184 GCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATG 70243 Query 213570 GTGCCCAGGTTCTGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTGTAGAGCATGTAGGG 213628 ||||| ||||||| ||| ||| ||||| ||||||| ||||||||||| ||| |||| Sbjct 70244 GTGCCAAGGTTCTTCTGG-TTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGG 70302 Query 213629 GGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 | |||||||| ||| ||| | || || | |||||| | | ||||||||| Sbjct 70303 GTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGT 70362 Query 213689 CCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCC 213748 ||| || ||| | || |||||||| | |||||||| | ||||||| ||| Sbjct 70363 GCGCTTG-GAGCGACCCTCG--GCCTCGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCC 70419 Query 213749 CCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCAT 213807 || | | || || || || ||| |||||||| |||||| ||| || Sbjct 70420 GTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTG 70479 Query 213808 CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC 213867 ||| || |||| |||||| || || |||||||| || ||| ||| || || | || | Sbjct 70480 CTC-AACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGCAC 70538 Query 213868 TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCC 213927 | ||| ||| ||| ||| || ||||| || || || ||||||| |||| ||||| Sbjct 70539 GCACCTCCTCCTTTCCGTGGTTCTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTGCC 70598 Query 213928 ACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCC 213984 | ||||| ||||||||||||||||| || || | |||| || |||||||| || | Sbjct 70599 AAGGCTCAATGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACGTAGC 70658 Query 213985 TGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG--GACTGTCCGTTGGT 214042 ||| |||| |||| || || | |||||| | |||||| ||| || ||||| Sbjct 70659 GAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCGTTGCTGAC--GCCATTGGT 70716 Query 214043 TCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGC 214102 || || || || || |||| ||| | | | ||| ||| || ||||||||||| Sbjct 70717 ACCGGCAATGTAGGAACCGGTACCCCGAATGCAGTGGATGTTGAGACCAATGCCACCGGC 70776 Query 214103 GTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 | ||||||||||||||||||| | | | ||| || |||||| | || ||| || Sbjct 70777 GGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTC 70836 Query 214163 TGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAG 214222 | | | | | | ||| || ||||||||| || || | || | |||||| || Sbjct 70837 CTTCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAG 70896 Query 214223 CGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGA 214282 |||||| || ||| | | |||| | || | ||| |||||||||| | | | Sbjct 70897 GGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACT 70956 Query 214283 GGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTC 214342 |||||| || |||||| | ||| | ||| |||||||||||||| | || Sbjct 70957 CTCGATGTCCTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGTTC 71016 Query 214343 TATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCC 214396 | | |||| ||| || ||| |||||||||||||| || |||||||| || Sbjct 71017 --GGCGACCTT----GCCGTTGATACGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAAACC 71070 Query 214397 AAAGTAGGAGTAG-GTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGT 214455 |||| | |||| | | | ||| | ||| |||| ||| | ||| |||| ||| || Sbjct 71071 AAAGAAATTGTAGTGGAAG-TCGCGCTCGTAGATGATGGCCGAGTCGAGCTGATCCTTGT 71129 Query 214456 GCTCTTGGCTCAGCTTGAAAATCTCGTCCGAGATCAAGGGA 214496 |||| | | |||| | | |||||||||||| |||| Sbjct 71130 GCTCCATGACGACCTTGTAGGTGGCGTCCGAGATCATGGGA 71170 >seq180 Length=182808 Score = 219 bits (242), Expect = 8e-52 Identities = 385/559 (69%), Gaps = 9/559 (2%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||||| |||| | |||||| || ||| ||||||| ||||||||| Sbjct 14558 AGAGGAGACAGGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGA 14617 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || |||||| ||||||| || | || ||||||||||| || | ||||| ||||||| Sbjct 14618 AGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAG 14677 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| ||||| || || || || || ||| | || | || | ||| || Sbjct 14678 AGAAGAAGATACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGGTGGCGCGCT 14737 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| ||||||| ||| |||||||| ||||||| ||||| || || ||||| | Sbjct 14738 TGTCGCTGATCCAGCGAAGGGCCCAGTCAGCCTTCTCCTTGACTACGGGAATGGTCTCGA 14797 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 ||| ||||| || || || | | || | ||||| |||| ||| Sbjct 14798 CGGCGTCAAAGAGGAACTCGCGCTGTTCAGGCTCACGGATGTAGGTGTCGATGAGGAGC- 14856 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| |||| ||||| | ||||| || |||||| || ||||||||| | || Sbjct 14857 --GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCATCGGG 14914 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 |||| |||| || || | | ||||| ||| | || ||||| ||||| || || | Sbjct 14915 CCTCGGCAGCCTGGACCTCGGAGCTGAATCGCTCGACGAGGTTCTCGTTGACGATACCGT 14974 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | || || || |||||||| ||||| || | ||| || ||||| |||| | |||| Sbjct 14975 CGGAGGCGGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCATTGTCGTTGAGTT 15034 Query 48600 CATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || ||| | || | |||||| ||||| | || || | ||||||||||| | Sbjct 15035 TGTTGTCCCAATCGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAG 15094 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | ||| ||||||||||| Sbjct 15095 CTTCTGCCTTTTTGTACAT 15113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529947180800