Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq241 302 8e-77 seq180 178 2e-39 >seq241 Length=120793 Score = 302 bits (334), Expect = 8e-77 Identities = 868/1317 (66%), Gaps = 41/1317 (3%) Strand=Plus/Plus Query 221377 CTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTGGTAGAT 221436 |||||||| |||| | | ||| | |||| || || ||||| ||||||||||| Sbjct 69844 CTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGCTCGAGGGCGGCGTGGTAGAT 69903 Query 221437 GGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCATA-CGCA 221495 ||||||||||||| || || | |||||||| || | || ||| || | || Sbjct 69904 GGTCTCAAAGATCTGAACATTAAGACGACGAGCCTCGGGCGAC-TCAAAGGCGTAGCCCA 69962 Query 221496 GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGT 221555 ||| ||| |||| || || ||||| || |||||||||||||| | ||| | | ||| Sbjct 69963 TGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGGTGACGCATGT 70022 Query 221556 TGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTT 221613 |||| ||| | || || | |||||||| |||||| |||||| | ||||| | ||| Sbjct 70023 TGGACCTGCGAGC-CTCCTCG-ACGGGATAGTAGTTGATGTCGATGATCTTGTTCAAGTT 70080 Query 221614 CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA---TTGAACACCAACTCGCC 221670 | |||| | || | |||||| ||| || ||||| ||| Sbjct 70081 CTTGCAGATGGCCTTGGCGACCTCG---------TGGAGACGCTTGAAA------TCGTA 70125 Query 221671 GCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGC 221730 | | | || ||| || | ||| | | || || | ||| ||||| || ||||| Sbjct 70126 GATTTTGGTGACGGGGTCGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTTGCAGACGGC 70185 Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 |||||||| | | |||| |||||||| || ||||||||| |||||||||||| Sbjct 70186 GACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGT 70245 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 || |||| || || || ||||||||||||||||||||||||||| || ||||| Sbjct 70246 GCCAAGGTTCTTCTGGTTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGTT 70305 Query 221851 GCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCTGGCGCTCACCGTCC 221909 || ||||| ||| | | | || || || |||||| |||| ||| | || || | Sbjct 70306 ACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCT-GGGCCTTGACGGTGC 70364 Query 221910 TCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGT 221969 |||| |||||||| | || || | ||||| ||||| | || |||| Sbjct 70365 GCTTGGAGCGACCCTCGGCC---TCGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCCGT 70421 Query 221970 ACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTT 222029 | ||| | || || || ||| | ||| ||||| || ||||| ||| | | Sbjct 70422 AGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTGCT 70481 Query 222030 TGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCT 222089 ||||||| ||||||||| || |||| ||| || || | ||||| |||| || ||| Sbjct 70482 CAACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGCACGCA 70541 Query 222090 GCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACG 222149 ||||||| |||| ||| || | ||| || | |||||||| | || | |||||| | Sbjct 70542 CCTCCTCCTTTCCGTGGTTCTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTGCCAAG 70601 Query 222150 GCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT 222209 |||| | |||| ||| | || || || |||||||| |||||||| || || | Sbjct 70602 GCTCAATGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACGTAGCGAG 70661 Query 222210 CCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG--GATCGACCGTTGGTGCC 222267 || ||| |||| ||||| | ||||| | |||||| || || || ||||| || Sbjct 70662 CCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCGTTGCTGA-CG-CCATTGGTACC 70719 Query 222268 CTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCACCGGCGT 222326 |||||| | |||| ||| | | | ||| | | || || ||||||||| Sbjct 70720 GGCAATGTAGGAACCGGTACCCCGAATG-CAGTGGATGTTGAGACCAATGCCACCGGCGG 70778 Query 222327 GTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCT 222386 || ||||||||||||||| ||||||||||||| ||||| || || ||||| |||| Sbjct 70779 TCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTCCT 70838 Query 222387 TGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCG 222446 | | | | | || ||||| ||||| | ||| | | || | || |||||| || || | Sbjct 70839 TCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAGGG 70898 Query 222447 TGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGG 222506 |||| ||||| |||||||| ||||| || | ||| ||||| | | | || Sbjct 70899 TGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACTCT 70958 Query 222507 CGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCA 222566 |||||| | ||||| || | || | |||| ||||| |||||| | || Sbjct 70959 CGATGTCCTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGTTCGG 71018 Query 222567 CAGGACCCTTGGAGCTG---GAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGT 222623 | || ||||| | || ||| ||||| || || || |||||||| |||||| Sbjct 71019 C--GA-CCTTGCCGTTGATACGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAAACCAAAGA 71075 Query 222624 AGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACTTGTGCT 222680 | ||| || ||||| | ||| | | ||| | ||| |||| |||||||| Sbjct 71076 AATTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAGCTGATCCTTGTGCT 71132 >seq180 Length=182808 Score = 178 bits (196), Expect = 2e-39 Identities = 389/576 (68%), Gaps = 19/576 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| || || |||||||||||| ||||| || || Sbjct 15122 ATCTGGCAAATGTACAAAAAGGCAGAAGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 15063 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGAC---GAGCAGCATTTTCTCAAG 25593 | || ||| | ||| ||| || | ||| ||| |||| || || || | Sbjct 15062 TCAAAAGACCTTCACGATTGGGACAACAAACTCAACGACAATGAGCGTCACTTCATCTCG 15003 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || ||||| || |||||||| || |||| || Sbjct 15002 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTCGTCGAGCGA 14943 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | || || ||| | |||||| || |||||||| || ||||| || Sbjct 14942 TTCAGCTCCGAGGTCCAGGCTGCCGAGGCCCGATGCTTCTACGGCTTTCAGATCATGATG 14883 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACAT-TACAGACGTC-G 25771 || || | ||||| ||| || | ||| || || || ||| |||| ||| | Sbjct 14882 GAGAACATCCACTCCGAGACCTACTC---GCTCCTCAT--CG-ACACCTACATCCGTGAG 14829 Query 25772 CC------GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 || | | ||| || || |||| ||| ||||| ||| ||| ||||| || Sbjct 14828 CCTGAACAGCGCGAGTTC--CTCTTTGACGCCGTCGAGACCATTCCCGTAGTCAAGGAGA 14771 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGG 25885 |||| |||||| | ||||||| | | || |||| || |||| ||| || || | Sbjct 14770 AGGCTGACTGGGCCCTTCGCTGGATCAGCGACAAGCGCGCCACCTTTGCCGAACGTCTCG 14711 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 | ||||||||||| || ||||| ||||| ||| || ||||| || |||||||||||| Sbjct 14710 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGC 14651 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || || ||||||||| || ||| ||||||||||||||| | | || | Sbjct 14650 TCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATG 14591 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 | || || |||| || |||||||| || |||| || Sbjct 14590 AAGGCCTTCACACCGACTTTGCCTGTCTCCTCTTCA 14555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841955412800