Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq113 113 3e-19 seq112 102 5e-16 seq55 100 2e-15 >seq113 Length=137664 Score = 113 bits (124), Expect = 3e-19 Identities = 363/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || |||||||| |||| Sbjct 120051 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTCGCCGTTTGGCAGAATGACCGT 120110 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | || ||||| ||||| ||||| | || || || |||||||| | || ||| Sbjct 120111 GTCGAGGTTATCGCCAACGACCAGGGTAACCGTACCACTCCTTCATATGTCGCCTTCACT 120170 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| || ||||||||||| || | || | || || ||| ||| Sbjct 120171 GATTCAGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAACCCTCACAAT 120230 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || || || | | || ||||| || || ||||| || ||||| || Sbjct 120231 ACCGTCTTCGACGCCAAGCGTCTCATCGGTCGCAAGTTCGATGACGCCGAGGTCCAGTCC 120290 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGAAGC 474627 |||||| || ||||| || |||| | || ||||| || || | || | | | Sbjct 120291 GATATGAAGCACTGGCCATTCGAGGTCACCTCCGTCGGTGGCAAGCCCCAGATCCGCATC 120350 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || ||| | || || || ||||| | Sbjct 120351 GAGTACAAG--GGTGAGAAGAAGACCTTCACCCCCGAAGAGATCTCCTCCATGGTCCTCC 120408 Query 474687 CCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | |||| |||| | || || || || | || || || | Sbjct 120409 TCAAGATGCGCGAGACCGCCGAG-GCCTACCTCGGCGGCACCGTCAAGGACGCCGTCGTC 120467 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || || || || ||||| || || || ||||| || | || Sbjct 120468 ACTGTCCCCGCTTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGATGCCGGTATCATC 120527 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| || ||| | || || ||||| || || || || ||||| | ||||| ||| Sbjct 120528 TCGGGTCTCAACGTTATGCGAATCATTAACGAGCCCACCGCCGCCGCCATCGCTTACGGT 120587 Query 474866 CTTGATAAGAATTCTGA 474882 || || ||||| |||| Sbjct 120588 CTCGACAAGAAGACTGA 120604 >seq112 Length=308905 Score = 102 bits (112), Expect = 5e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| || ||||| || || || ||||| || || |||||| Sbjct 97072 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTG 97131 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| |||||| ||||| ||||||| | | | | |||||||||| Sbjct 97132 TCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCT-CAAGGGTAAT 97190 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| |||||||| |||||||| || Sbjct 97191 GGTCTTACCGGTCAGAGTCTTTACGAAAATCTG 97223 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||||||||| | || || || || ||||| || || ||||| Sbjct 97300 TCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTA 97359 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| |||||| ||||| ||||||| | | | ||||||||||| Sbjct 97360 TCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGA-CCTCAAGGGTAAT 97418 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| |||||||| ||||| || || Sbjct 97419 GGTCTTACCGGTCAGAGTCTTTACGAAGATCTG 97451 >seq55 Length=29365 Score = 100 bits (110), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || |||||||| ||| || || | || || || | |||||| Sbjct 15993 CGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTT 16052 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | || || || |||||||| || ||||| ||||| || |||||||| ||||| ||| Sbjct 16053 CGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCT 16112 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| |||||||| |||||| || || || || | | ||||| Sbjct 16113 TCCTTGTCCTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGA 16172 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| | |||||| || || || || Sbjct 16173 GTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTG 16210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268168690761260