Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq241 174 2e-38 seq180 102 1e-16 seq200 100 3e-16 >seq241 Length=120793 Score = 174 bits (192), Expect = 2e-38 Identities = 828/1298 (64%), Gaps = 27/1298 (2%) Strand=Plus/Minus Query 75145 TTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCAT 75204 || ||||||| |||| ||||| ||| ||| || | || || | |||| || Sbjct 71077 TTTCTTTGGTTTCAAGACCCTCGAGCGCTCCTACCTCCTCCGTATCAACGGCAAGGTCGC 71018 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| || ||| ||||| ||||||| || || | || |||||||| | ||||| || Sbjct 71017 CGAACGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATCCACGGCCAGGACATCGA 70958 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAA 75323 || | | ||||| ||| || ||||| ||| ||| || | ||||| | || | Sbjct 70957 GAGTGCCATCGAGACCTACAACCTCATGTCGCAAAAGTACTTT-ACCCACGCTTCCCCCA 70899 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 |||||||||| || ||||| || || ||| | || || ||||| || ||| | Sbjct 70898 CCCTCTTCAACGCCGGTACTCCCCACCCACAGCTCTCGTCGTGTTTCCTCGTCACCATGA 70839 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||| ||||| ||| |||| || || | ||||| | | || || ||||| ||| Sbjct 70838 AGGACGACTCGATCGACGGCATTTACGACACTCTCAAGACCTGCGCCATGATCTCCAAGA 70779 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCA-TG--ATGTGAGAGCCAATAAATCTCGTATTC 75500 || || || ||||| | ||||||| || | | | || | || ||| Sbjct 70778 CCGCCGGTGGCATTGGTCTCAACATCCACTGCATTCGGGGTACCGGT---TCCTACATTG 70722 Query 75501 GGGGGACAAATG--GTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 75558 || || |||| ||| | || | ||||| | || |||||||| || |||||| ||| Sbjct 70721 CCGGTACCAATGGCGTC-AGCA-ACGGTATCGTACCCATGCTTCGTGTCTTTAACAACAC 70664 Query 75559 AGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTT 75612 || ||||| || | || ||| || |||| || || | || ||||| | Sbjct 70663 GGCTCGCTACGTCGACCA---GGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACAT 70607 Query 75613 GGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGA 75672 || || ||||| | ||| || | |||||||| || | || ||||| || | || Sbjct 70606 TGAGCCTTGGCACTCGGATGTCTTTGAGTTCCTCGACCTGCGTAAGAACCACGGAAAGGA 70547 Query 75673 AGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 |||| || |||| ||||| | |||| ||| | || || || ||||||||| | Sbjct 70546 GGAGGTGCGTGCCCGAGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAG 70487 Query 75733 GGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792 ||||||| || ||| | ||||| || | || || || || || |||||| |||| Sbjct 70486 GGTTGAGCAGAACGGTGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGA 70427 Query 75793 CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAA 75852 | || || || ||||| |||||| || || | |||||| | |||| Sbjct 70426 CTGCTACGGCGACGAATTTGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAA 70367 Query 75853 TGCG-ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 ||| || || | || | | || | | ||| | || || ||| | || ||||| ||||| Sbjct 70366 -GCGCACCGT-CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACC 70309 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 || | || | || || |||||||| ||| || ||||| ||||| ||||| | Sbjct 70308 GGTAACCCCTTCATCCTCTACAAGGACGCTGCCAATCGCAAGAGCAACCAGAAGAACCTT 70249 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || |||||| |||| || || ||||| || || | ||||||| | || ||| Sbjct 70248 GGCACCATCAAGTGCTCCAACCTCTGCACCGAGATCATCGAGTACAGTGCCCCCGACGAG 70189 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC 76090 || || ||||| | || || ||||| || || | | | || | | || Sbjct 70188 GTCGCCGTCTGCAACCTTGCCTCGATCGCTCTCCCCACCTTTATCGACCCCGTCACCAAA 70129 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150 | | |||| | || || || || | ||| | ||| || | ||| Sbjct 70128 ATCTACGATTTCAAGCGTCTCCACGAGGTCGCCAAGGCCATCTGCAAGAACTTGAACAAG 70069 Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 |||| |||| || | |||||||| ||| || || | ||| || ||||| ||| | Sbjct 70068 ATCATCGACATCAACTACTATCCCGTCGAGGAGGCTCGCAGGTCCAACATGCGTCACCGT 70009 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTT 76270 || || ||| | ||||| || |||||||| || | || || | ||||||| ||| Sbjct 70008 CCCATCGGTATCGGTGTCCAGGGTCTCGCTGACGCCTTCATGATCATGGGCTACGCCTTT 69949 Query 76271 GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCC 76330 || || || || | |||| || |||||||| ||||| || ||||| || Sbjct 69948 GAGTCGCCCGAGGCTCGTCGTCTTAATGTTCAGATCTTTGAGACCATCTACCACGCCGCC 69889 Query 76331 CTGGAGGCGA-GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 || || |||| || || ||||| | | || || |||| ||||| | || || || Sbjct 69888 CTCGA-GCGATCGTGCGAGCTGGCTCAGGAGCACGGCACCTACGAGACCTATGCCGGCTC 69830 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 ||||| || || || | |||||||| || ||||||| Sbjct 69829 GCCCGCTTCGCAGGGTGAGCTTCAGTACGACATGTGGG 69792 >seq180 Length=182808 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| ||||| || || |||| ||||| || ||||||||||||||||| || || | Sbjct 14728 CCTTTGCCGAACGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGT 14669 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | | || | ||| | |||||||| ||||||||||| || || |||||| || | Sbjct 14668 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACG 14609 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | || || ||||| ||||| || || ||| || |||||| Sbjct 14608 AGCTCATCTCCCGTGATGAAGGCCTTCACACCGACTTTGCC 14568 >seq200 Length=338114 Score = 100 bits (110), Expect = 3e-16 Identities = 281/424 (66%), Gaps = 8/424 (2%) Strand=Plus/Plus Query 13514 CTCAAGAAGACCGATGGTGCTCGCAAGT-CCAAAATTACCGGTATTCCCAAGTTGGATGA 13572 |||||||||||||| || | | | || ||| || ||| || |||||| | || || Sbjct 72844 CTCAAGAAGACCGACGGA-CACAAACGTACCAGGATCACCAACATCCCCAAGCTCGAGGA 72902 Query 13573 CGCGAACAAGGCGGGTACGGCACAATCTGGAAAG--TGTACTCTCATTGTCACAGAGGGT 13630 ||| ||||| || ||| |||| | || | ||||| ||||| |||| || ||| Sbjct 72903 CGCCAACAATGCTGGT--GGCAGGAAGGCCAAGGACTGTACGCTCATCCTCACCGAAGGT 72960 Query 13631 GATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACGGT 13690 || || || || || ||||| || | ||| || | || || | || | |||||| Sbjct 72961 GACTCTGCCAAGACGCTCGCCGTGTCCGGTATCGTCGAGGTAGGAAGAGACAATTACGGT 73020 Query 13691 GTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCACAGCTCACA 13750 || ||||| ||||| ||||| | |||||||| || || || | ||| ||| Sbjct 73021 GTCTTCCCGCTTCGAGGTAAGCTTCTCAATGTTCGTGAGGCCTCTCACGATCAGATCATG 73080 Query 13751 TCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAAGGAAAAGACTAC 13810 || ||| |||| | ||||| |||| || ||||| || || || ||| | || Sbjct 73081 AAGAATGCTGAGATCAAAGCCATCAAGGAGATTCTCGGTCTCCAGCACGGCAAACAGTAT 73140 Query 13811 CAAGATGTTTCTGAACTT-CGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGA 13869 | || || | ||| || || || || | ||||| ||||| ||| ||| | || Sbjct 73141 CTTGACGTCAAC-AGCTTGCGTTACGGCAGTGTCATGATCATGACCGATCAGGATCACGA 73199 Query 13870 TGGTTCTCACATCAAGGGTCTCATCCTAAATATGATCCACTACTTCTGGCCCAGTCTTCT 13929 |||||| || ||||||||||||||| | || | || | |||||| || ||||| Sbjct 73200 TGGTTCGCATATCAAGGGTCTCATCATCAACTTCCTCGATCACTTCTACCCGTCGCTTCT 73259 Query 13930 CAAG 13933 |||| Sbjct 73260 CAAG 73263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567773005600