Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq112 93.3 8e-14 >seq112 Length=308905 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || |||| ||| ||||| ||||| || || || ||||| || || Sbjct 96625 TGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGGATACCCTCCTTATCCTGAATC 96684 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || ||||||||||| || | ||| || || || ||| Sbjct 96685 TTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACCTCCAAAGTGATCGTCTTTCCT 96744 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 96745 GTGAGTGTCTTGACAAAGATTTGCAT 96770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899651644808400