Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq55 89.7 1e-12 >seq55 Length=29365 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || | ||| | |||| ||| || ||| || || || || Sbjct 15987 CCACCGCGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 16046 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| | || || | || || || || || || | | ||| ||||||||||| Sbjct 16047 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGA 16106 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || || |||||| || | || || || || || Sbjct 16107 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 16166 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| ||||| || || || || | ||| |||||||| Sbjct 16167 TCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984476909655750