Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq180 105 2e-17 seq240 93.3 1e-13 >seq180 Length=182808 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133452 AGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTC 133511 |||| |||||||||| || |||||| |||||||| || | ||||| |||| Sbjct 14773 AGAAGGCTGACTGGGCCCTTCGCTGGATCAGCGACAAGCGCGCCACCTTTGCCGAACGTC 14714 Query 133512 TCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTT 133571 ||||||| ||||||| || ||||| || || ||| ||| ||||| ||| || || | Sbjct 14713 TCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCT 14654 Query 133572 GGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGG 133631 |||| || ||||||||| | | || || || || || ||||| || || || | | Sbjct 14653 GGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTG 14594 Query 133632 ACGAGGCACTTCACACCGAATTTGCC 133657 | || | ||||||||||| |||||| Sbjct 14593 ATGAAGGCCTTCACACCGACTTTGCC 14568 >seq240 Length=223170 Score = 93.3 bits (102), Expect = 1e-13 Identities = 237/357 (66%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTC 302550 || || || || || ||||| | | ||||||||| ||||| | |||| || || Sbjct 203905 TCGATACCATCTTCTCCGTAAGCAAACTGAATGACGTTGTTAGTCGAGTTTCGCACCGTG 203846 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 || || | | ||| | ||||| | ||||| | ||||||||| |||||||| Sbjct 203845 CCGTCGTAGCAGACCATGACATCTTCGAGCGCCTTGACCAGACGACGCTGGATATAACCC 203786 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || | || || || || || ||||| ||||| |||||||| |||| || |||||| Sbjct 203785 GTCTCGGCAGTCTTGACGGCCGTGTCAATCAGACCTTCACGACCAGCCATGGCGTGGAAG 203726 Query 302671 AATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC 302729 || | ||| | || || || || | | | ||| |||| ||||||||||| ||| Sbjct 203725 AAGAACTCCTG-GGCAGTGAGACCTCGCAGGTACGAGTTCTCGACGAAACCACGACTCTC 203667 Query 302730 GGGCG---AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| | ||||||| |||||| ||||| || || | | || | || | || Sbjct 203666 GGGGGTAAAATCGTC---CTTGGTGAAGTGAGGAAGACTGCGGTGGCGGAAACCAAAGGG 203610 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || ||| |||||||| | || | ||||||||| || || Sbjct 203609 AATACGCTTGCCTTCGACGGATTGCTGTCCGACACAAGCCGACATCTGCGAGATGTT 203553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812979872565