Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq241 185 1e-40 seq180 147 3e-29 seq229 113 6e-19 seq240 104 3e-16 seq224 98.7 1e-14 >seq241 Length=120793 Score = 185 bits (204), Expect = 1e-40 Identities = 221/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| ||||||| ||||||||| || |||||||| |||| |||||| Sbjct 70645 CTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCGTTGCT 70704 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||| ||||| || || | ||||| |||| | || | ||| | | || Sbjct 70705 GACGCCATTGGTACCGGCAATGTAGGAACCGGTACCCCGAATGCAGTGGATGTTGAGACC 70764 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| ||||| | ||||||||| | ||||| ||||| |||||||| ||||| || Sbjct 70765 AATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTC 70824 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 |||||||||| |||||||| ||||| || ||||||||| || ||||| | || || Sbjct 70825 GATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACC 70884 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| ||||| | || ||| || ||| |||||||| || |||||| Sbjct 70885 GGCGTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGT 70944 Score = 120 bits (132), Expect = 4e-21 Identities = 279/426 (65%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || |||||||||||| ||||||| || | | || || ||||||| ||||||| Sbjct 70206 ACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTGC 70265 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | | ||| | |||||||||| ||| ||| |||| ||||||||| |||||| | Sbjct 70266 TCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACT 70325 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGC---GCGCGGCCCTNNN 1628338 ||| |||||| |||||| || | || | ||| || ||| | ||| |||| Sbjct 70326 CGAGGATGGCGTACCAGAGCT---TCTGGGCCTTGACGGTGCGCTTGGAGCGACCCTCGG 70382 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| | |||||||||| ||| || ||||| Sbjct 70383 CCTCGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACCGGGGC 70442 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | |||||||||||| || | | ||| | | | ||| ||||| Sbjct 70443 ACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTC--TTCATGAAGAG 70500 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 || ||| || ||||| ||||| || || || || ||||||||| |||||||| Sbjct 70501 ATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTT 70560 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| |||||||| | || | | || | |||||| ||||| | |||| |||||| Sbjct 70561 CTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAA 70620 Query 1628577 GGCGCC 1628582 ||| || Sbjct 70621 GGCACC 70626 >seq180 Length=182808 Score = 147 bits (162), Expect = 3e-29 Identities = 206/287 (72%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| || || ||| | |||||| |||| ||| ||||||||||| || |||||| Sbjct 14587 CCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTTC 14646 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | ||| ||| ||||| ||||| ||||||||||| |||||| Sbjct 14647 TTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATACCCTCGACGGCAGCAAAG 14706 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | ||| || |||||||||||| | || || | | ||||||| | |||||| Sbjct 14707 GCAACGAGACGTTCGGCAAAGGTGGC---GCGCTTGTCGCTGATCCAGCGAAGGGCCCAG 14763 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG---TGGTCCTTT 869416 || ||||| | | | || || | || |||| |||| ||||||| | | || | Sbjct 14764 TCAGCCTTCTCCTTGACTACGGGAATGGTCTCGACGGCGTCAAAGAGGAACTCGCGCTGT 14823 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | || || || ||||||||||| |||||||| |||||||| Sbjct 14824 T---CAGGCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTC 14867 Score = 127 bits (140), Expect = 2e-23 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || |||||| |||||||| ||| | |||| || | ||| Sbjct 14869 GAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCATCGGGCCTCGGCAGCCTGG 14928 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| ||||| |||||| ||||||||| Sbjct 14929 ACCTCGGAGCTGAATCGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGAAG 14988 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || ||||||||| ||| ||||| ||||| | |||| |||| |||| | | Sbjct 14989 AAGGCGAGGACGTGCGAGATGAAGTGACGCTCATTGTCGTTGAGTTTGTTGTCCCAATCG 15048 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| |||||| | ||||||||||||||||| || || || ||||||||| Sbjct 15049 TGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCTGCCTTTTTG 15108 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 15109 TACATTTGCCA 15119 >seq229 Length=127810 Score = 113 bits (124), Expect = 6e-19 Identities = 262/393 (67%), Gaps = 8/393 (2%) Strand=Plus/Plus Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCAC 1573835 || || ||| | |||||||| || || ||| |||||||| | || |||||| || || Sbjct 41432 CTTCCCTGGGTAGAAAAGTACCGACCCATGCGTCTCGACGATGTCGTTGGCAACAAGGAC 41491 Query 1573836 GCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCG 1573895 || ||| | ||||| || | ||||||| || || | ||| | | | Sbjct 41492 ACCATCGACCGTCTCAAAGTCATTCAGAACGACGGCAACTGTCCGCATCTCCTCATTTCT 41551 Query 1573896 GGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGC 1573955 |||| || || | || |||||||| | ||||| ||||| | || | ||| Sbjct 41552 GGTCTTCCTGGTATTGGTAAGACCACCTCGGTACTCTGTCTTGCGCGAGCGCTTCTCGGC 41611 Query 1573956 GCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTC 1574015 | || | | |||| || || ||||||||||| || || || ||||| ||||||||| Sbjct 41612 GATGCATACAAAGAGGGGGTTCTTGAACTCAACGCATCCGATGAACGCGGTGTCGACGTC 41671 Query 1574016 GTGCGCAAGATCATCAAGCACCACGCCTCCA-AGAGGATCGAC---CTGCCGCCCGGACG 1574071 || || || | |||||| || | || ||| || | | || || ||||| | Sbjct 41672 GTTCGAAACAAGATCAAG----ACATTTGCACAGAAGAAAGTCTCGCTCCCTCCCGGTAG 41727 Query 1574072 CCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCT 1574131 || ||| | ||||||||||||||||||||| || | || | || ||||||||||| | Sbjct 41728 ACATAAGATTATCATCCTCGACGAGGCCGACAGCATGACTCCCGCCGCCCAGCAGGCATT 41787 Query 1574132 GCGGTCCACCATGGAAAAGCACACCAACACGAC 1574164 ||| |||||||| | || ||||||| || Sbjct 41788 GCGTAGAACCATGGAGATCTACTCCAACACAAC 41820 >seq240 Length=223170 Score = 104 bits (114), Expect = 3e-16 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 507599 GTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAACCGGCAGCCGTCGCTGCAC 507658 |||||||||||||| | |||||| ||| | | ||||| ||||| ||| ||||| Sbjct 202575 GTCGAGCGCCACCTCAAGGATGGCGACTACGTCCTCTTTAACCGTCAGCCCTCGTTGCAC 202634 Query 507659 ATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCGGGCGCACCATGCGATTCAAC 507718 | | |||||| | ||||| | | || |||| | |||| | || ||||| Sbjct 202635 AAGATGTCCATGATGTCGCACAGGATCAAGCTCATGGACTACTCCACCTTCCGTCTCAAC 202694 Query 507719 CTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTG 507778 || |||||| | ||||||||||| || ||||| |||||||||||| ||||||| Sbjct 202695 CTCAGTGTCACGCCTCCATACAACGCCGATTTCGACGGTGACGAGATGAACTTGCACGTA 202754 Query 507779 CCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTCAAGACC 507838 ||||| ||| | | || |||||| | | || | | | ||| | | ||| Sbjct 202755 CCCCAAAGCGAAGAGACTCGTGCCGAGCTCTCCCAAATCGCTTGGGTGCCTCGTCAGATT 202814 Query 507839 GTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 || ||||| ||||||||||||||| |||| || Sbjct 202815 GTCTCGCCCCAGGCCAACAAGCCCGTCATGGG 202846 >seq224 Length=276835 Score = 98.7 bits (108), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||| || || || |||||||||||||| |||| || Sbjct 261981 GCTTGGAAAGCTCACCGGGGAGGATGAGACGAACAGCGGTCTGGATCTCTCGCGACGAGA 262040 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || || || | ||||||||| ||||||| || | | Sbjct 262041 TGGTCGACTTCTTGTTGTAGGAAGCGAGCTTGGAGGCCTCGGTAGCGATGCGCTCAAAGA 262100 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | ||| |||||||| | | | ||| | |||||| ||||| || |||||||| Sbjct 262101 TGTCCTGGACGAACGAGTTGAGAATGGCCATGGCCTTGTTCGAGATACCAGTGTCGGGGT 262160 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||| || ||||||| | | |||||| Sbjct 262161 GAACCTGCTTGAGGACACGGTAGATGTAGGTCGAGTA 262197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107119094152665