Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq241 123 2e-23 seq55 114 1e-20 seq112 113 4e-20 seq199 96.9 3e-15 >seq241 Length=120793 Score = 123 bits (136), Expect = 2e-23 Identities = 963/1528 (63%), Gaps = 56/1528 (4%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || ||||| | ||| |||||| |||||||||| ||| |||| ||||| Sbjct 69599 ACCTGGAACTCGCCGGCGAGTACACGACGAGAGTAAATGTTGGAAGTGTAAGGTTCAAAG 69658 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||| || ||||||||| || | ||||| ||||| || | | || Sbjct 69659 CACTCGTTGAAACCGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAGGAGC 69718 Query 138628 GAATTCCGTAAACCGTGAAGCTTG--ATTCGTT-CCTTGAGCGACGACCAGTCCCACAAA 138684 ||||| || | |||||| |||| | || | ||||||| | ||||||||| | Sbjct 69719 GAATTGCGCAGACCGTG---CTTGGCAATCTTGGCCTTGAGGCCGGCCCAGTCCCAGAGG 69775 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || ||| | |||||| |||||||| | | ||| ||||| ||| Sbjct 69776 TCCGAAGGGGTGACACCCCACATGTCGTACTGAAGCTCACCCTGCGAAGCGGGCGAGCCG 69835 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACC 138803 | || | ||||| || ||| || |||| |||| | |||| ||||| || | Sbjct 69836 GCATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGC 69894 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || || ||||| ||| || || ||||||| ||| | || Sbjct 69895 GTGGTAGATGGTCTCAAAGATCTGAACATTAAGACGACGAGCCTCGGGCGACTCAAA-GG 69953 Query 138864 CAT-GCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 | | || | ||| |||| ||||| || || || || || || | |||| || || | Sbjct 69954 CGTAGCCCATGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGGT 70013 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGT 138982 | |||| || ||| || | |||| ||||| ||||| | |||||||| |||| Sbjct 70014 GACGCATGTTGGACCTGCGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGATCTTGT 70073 Query 138983 TTAAATT-TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCC 139041 | || || | ||| || |||| | | | | || | |||||||| | Sbjct 70074 TCAAGTTCTTGCA-GATGGCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGATT--- 70129 Query 139042 CCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACC 139101 ||| || |||| ||||| ||| || || | |||||||| | |||||| || Sbjct 70130 ---TTG--GT-GACGGGGTCGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTTGCAGACG 70183 Query 139102 GCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATC 139161 || || ||||||||| | ||||| |||| || |||| || | || |||||||| Sbjct 70184 GCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATG 70243 Query 139162 GTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGT 139221 || || | || | || ||||| || || || ||| || ||||| || || | || Sbjct 70244 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGGG 70303 Query 139222 GTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACA-AGTCCCTAG--CTTGTATT 139278 | || || || || | ||| | ||| | | || || || | |||| Sbjct 70304 TTACCGGTCTCGGTCTGCGACTCGAGGATGGCGT--ACCAGAGCTTCTGGGCCTTGACGG 70361 Query 139279 TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCG 139338 || ||| | | | | ||| |||||| |||||||| || ||| || ||| Sbjct 70362 TG-CGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCCG 70420 Query 139339 TAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCC 139398 ||| ||| | ||| || | |||| || || |||||||||||||| | |||||| | Sbjct 70421 TAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTGC 70480 Query 139399 TTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCG---AACAGCAAATCG----CG 139451 | || | | ||||||| ||||| || | ||| | ||| || ||| ||| || Sbjct 70481 TCAACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTC-TCGGGCACG 70539 Query 139452 CGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGC 139511 | ||| || | ||||| | ||||| || || ||||| ||||| || || | Sbjct 70540 CACCTCCTCCT-TTCCGTGGT--TCTTACG---CAGGTCGAGGAACTCAAAGACATCCGA 70593 Query 139512 GTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGAC 139568 |||||| || || | |||||||| | || || || ||| ||||| || ||||| Sbjct 70594 GTGCCAAGGCTCAATGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGAC 70653 Query 139569 GTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT-CCGT 139627 || || | | || || || || || | ||| || | | |||| | |||| || | Sbjct 70654 GTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCGTT-GCTGACGCCAT 70712 Query 139628 TGGT----GCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 |||| || | | | || || | | | | || | | || | |||| || || Sbjct 70713 TGGTACCGGCAATGTA-GGAACCGGTAC---CCCGAATGCAGTGGATGTTGAGACCAATG 70768 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTAT 139742 || ||| | ||||| || | |||| || | | || ||||| || || || Sbjct 70769 CCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGA-GTGTCGTAAATGCCGTCGAT 70827 Query 139743 GCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGC 139802 |||||||| ||| ||||| || || || ||||| || || || | || ||||| Sbjct 70828 CGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGC 70887 Query 139803 TGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 || || || || ||||| || || | || |||||| | | ||| || || Sbjct 70888 GTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTC 70947 Query 139863 GATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 |||||| ||| | || ||| ||||||||||| |||| || ||||| ||||| || || Sbjct 70948 GATGGCACTCTCGATGTCCTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTG 71007 Query 139923 GATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTA 139982 | |||||||| ||| ||| | ||| || || | ||| ||||||||| | Sbjct 71008 GGGACGTTCGGCGACCTTGCCGTTGATACGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAA 71067 Query 139983 GCCAAAGTACCTATAGTTGAAATCGAGC 140010 |||||| | | |||| ||| ||| || Sbjct 71068 ACCAAAGAAATTGTAGTGGAAGTCGCGC 71095 >seq55 Length=29365 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || ||||| || ||||| || || || | Sbjct 16442 GATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCTC 16383 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || ||||| || Sbjct 16382 CGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCA 16323 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | |||||||| || || ||||| |||||| | | | || || || || Sbjct 16322 GCAGCGACTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACTCTCTCCGACTACAA 16263 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||| ||||| || || || ||| | ||| Sbjct 16262 CATTCAGAAGGAGTCTACCCTCCACCTTGTG 16232 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | |||||||| || || || || || || || || | Sbjct 16213 ATGCAGATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGTCCTCG 16154 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || ||||| Sbjct 16153 GACACCATCGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGATCAG 16094 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || ||||| ||||| ||| | || || || ||| Sbjct 16093 CAGCGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTCTCGGACTACAAC 16034 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| || || || || | || | || | ||||| |||| Sbjct 16033 ATCCAGAAGGAGTCTACCCTTCATCTCGTCCTCCGTCTTCGCGGTGGCG 15985 >seq112 Length=308905 Score = 113 bits (124), Expect = 4e-20 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | |||||||| || || ||||| || || || | | Sbjct 96542 ATGCAGATTTTTGTCAAGACGTTGACCGGTAAGACGATCACGCTTGAGGTCGAGTCTTCT 96483 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || || || || || || |||||||| || Sbjct 96482 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 96423 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||||| |||||| | | || ||||| ||| Sbjct 96422 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTACAAC 96363 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGA 24939 || || ||||| |||||||| ||| | || ||||| |||| || ||| |||||| Sbjct 96362 ATCCAGAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGTGGCGGC--AACTGA 96309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || |||||||| || ||||| || || || || | | Sbjct 97226 ATGCAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97167 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || |||||||| || Sbjct 97166 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 97107 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| ||||| ||| | | || || || ||| Sbjct 97106 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97047 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || | ||| | || || || Sbjct 97046 ATCCAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTCCGTGGTGG 97000 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| || ||||| || || || || | | Sbjct 97454 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97395 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || || || || || || |||||||| || Sbjct 97394 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 97335 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| ||||| || || ||||| ||||| ||| | | || || || ||| Sbjct 97334 CAGCGATTGATTTTTGCTGGTAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97275 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || | ||| | || || || Sbjct 97274 ATCCAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTCCGTGGTGG 97228 >seq199 Length=93844 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || ||||| || || | | Sbjct 53886 GATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTC 53827 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 53826 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCA 53767 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||| ||||| | | | | || || || || Sbjct 53766 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 53707 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || || ||| | ||| Sbjct 53706 CATCCAGAAGGAGTCCACCCTCCACCTTGTG 53676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896222188600