Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq164 131 1e-25 >seq164 Length=275258 Score = 131 bits (144), Expect = 1e-25 Identities = 215/310 (69%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 |||| || ||||| ||||| | ||| || || | ||||| ||| |||||| || | Sbjct 14008 TGAGATCGGTCTCGGGGTTCTTACAGTCGCCGCAGAGGACAAATTTGTCGATGAAGCCGT 13949 Query 34373 CAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTT 34432 | || || || | | ||| |||||||| ||| ||||| ||| | || ||||| | Sbjct 13948 CGAGAAGCTCTCGGAGACGGTCGGCGTCGTGGGCGCCATTGACAATGTAGCGGTCGTTCT 13889 Query 34433 TGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGG 34492 | | |||| | || || || || ||||| || || ||| |||| || ||||| ||| Sbjct 13888 TCTCGTCGAACGAAGTCTGGGCACCGAGCTCACAGCCAAAGAACTTGGTAGGGTAGGTGG 13829 Query 34493 CCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGT 34552 ||||| | || | || || |||| ||||||| |||||| |||||||| |||| Sbjct 13828 GAGGACGGCTGAGGGAACGAGCAATGTCGGACATGTTGGGGATGACGGTCTTGATACCGT 13769 Query 34553 TGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 ||||||| || |||| ||||| || | | ||||| ||| ||||||||| ||| Sbjct 13768 TGCCCTTGCCCTCGATCTTGGTCTGGAGGAGAGGCATGCGGTATCGGTAGAACTTGTCGT 13709 Query 34613 CCACATTGCG 34622 | |||| ||| Sbjct 13708 CGACATCGCG 13699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840367280785