Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq180 190 3e-42 seq241 154 2e-31 seq224 123 4e-22 seq240 111 2e-18 seq229 107 3e-17 >seq180 Length=182808 Score = 190 bits (210), Expect = 3e-42 Identities = 238/326 (73%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || || ||| | |||||| ||| ||| ||||||||||| || |||||| Sbjct 14587 CCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTTC 14646 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||| ||| ||||| ||||| ||||||||||| |||||| Sbjct 14647 TTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATACCCTCGACGGCAGCAAAG 14706 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| || |||||||| ||| | || || | | ||||||| | ||||| Sbjct 14707 GCAACGAGACGTTCGGCAAAGGTGGC---GCGCTTGTCGCTGATCCAGCGAAGGGCCCAG 14763 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | | | || ||| | || |||| |||| ||||||| || || Sbjct 14764 TCAGCCTTCTCCTTGACTACGGGAATGGTCTCGACGGCGTCAAAGAGGAACTCGCGCTGT 14823 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | || || || |||||||||||||||||||||||||||||| ||||||||||| || Sbjct 14824 TCAGGCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCC 14883 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCA 794666 || |||||| ||||| || ||||| Sbjct 14884 ATCATGATCTGAAAGCCGTAGAAGCA 14909 Score = 127 bits (140), Expect = 3e-23 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||||| | |||||||| |||| || || | |||||||| Sbjct 14905 AAGCATCGGGCCTCGGCAGCCTGGACCTCGGAGCTGAATCGCTCGACGAGGTTCTCGTTG 14964 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| |||||| ||||||||| ||||||||||||||| ||| ||||||||||| | | Sbjct 14965 ACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCATTG 15024 Query 796261 TCGCTGAG---CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| |||| | |||| | | ||| |||||||| ||||||||||||| Sbjct 15025 TCGTTGAGTTTGTTGTCCCAATCGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCGGTC 15084 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || ||||| || || |||||||||||||| | ||| ||| Sbjct 15085 CAGAAGGAAGCTTCTGCCTTTTTGTACATTTGCCAGATC 15123 >seq241 Length=120793 Score = 154 bits (170), Expect = 2e-31 Identities = 342/510 (67%), Gaps = 25/510 (5%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| ||||||| ||||||||| || |||||||| || | |||||| Sbjct 70645 CTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCGTTGCT 70704 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||| ||||| || || | ||||| || | | || | ||| | | || Sbjct 70705 GACGCCATTGGTACCGGCAATGTAGGAACCGGTACCCCGAATGCAGTGGATGTTGAGACC 70764 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| ||||| | ||||||||| | ||||| | || || || ||||| ||||| || Sbjct 70765 AATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTC 70824 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 |||||||||| |||||||| | || || ||||||||| || ||| | | || || Sbjct 70825 GATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACC 70884 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| |||||||| ||||| | || || | ||| ||| |||||| | |||||| Sbjct 70885 GGCGTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGT 70944 Query 2073840 GGCGA--GCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897 ||| |||| | || ||| ||| ||| | ||| || | || Sbjct 70945 CTCGATGGCACTCTCG-----ATGTCCTGGCCGTGG--------ATA----CCAACAGCA 70987 Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGAC---GGCGTCGCGCACCTTGGTCAGG 2073954 || ||||||| ||||| |||||| || ||| |||| | ||| | || || ||| Sbjct 70988 ACACGCATGAGCATGTGCTGGGGACGTTCGGCGACCTTGCCGTTG-ATACGGAGG--AGG 71044 Query 2073955 TAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGG 2074014 ||||| || |||||| | |||||| | |||| | ||||||||||| | | Sbjct 71045 TAGGAGCGCTCGAGGGTCTTGAAACCAAAGAAATTGTAGTGGAAGTCGCGCTCGTAGATG 71104 Query 2074015 ATGGCGGCGTCGAGGGCCTCCTTGTGCGCC 2074044 ||||| | |||||| ||||||||| || Sbjct 71105 ATGGCCGAGTCGAGCTGATCCTTGTGCTCC 71134 Score = 136 bits (150), Expect = 6e-26 Identities = 279/421 (66%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||||||||| ||||||| || | ||||||| ||||||| |||||||| Sbjct 70206 ACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTGC 70265 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | | | ||| | |||||||||| || ||| |||| ||| |||||| |||||| | Sbjct 70266 TCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACT 70325 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || |||||| |||| | | | || || | | | | | ||| |||| Sbjct 70326 CGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTGCGCTTGGAGCGACCCTCGGCCT 70385 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 |||| ||||| || |||||| ||| ||| || ||||| || Sbjct 70386 CGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACT 70445 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 || ||||| | |||||||||||| ||| | | || | ||| || || ||| Sbjct 70446 CGTTGGGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGG 70505 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 ||| ||| |||| ||||| || || || || ||||||||| ||||||||||| Sbjct 70506 GGACCCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTTCTTAC 70565 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 ||||||||| | || | || || | |||||| ||||| | |||| ||||||||| | Sbjct 70566 GCAGGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCAC 70625 Query 2071994 C 2071994 | Sbjct 70626 C 70626 >seq224 Length=276835 Score = 123 bits (136), Expect = 4e-22 Identities = 179/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| | ||||||||| || |||| ||||||| ||| || || ||| | | || Sbjct 261945 ACTTGGTGACCGACTTGGTACCTTCCGAGATGGCGTGCTTGGAAAGCTCACCGGGGAGGA 262004 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | || || || |||||||||||||| || | ||| || |||||| | | Sbjct 262005 TGAGACGAACAGCGGTCTGGATCTCTCGCGACGAGATGGTCGACTTCTTGTTGTAGGAAG 262064 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | || | ||||||||| ||||||| || | ||||| | ||| |||||||| | | Sbjct 262065 CGAGCTTGGAGGCCTCGGTAGCGATGCGCTCAAAGATGTCCTGGACGAACGAGTTGAGAA 262124 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | | ||| | ||||| ||||| || ||||||||| ||||||||||| || ||| | Sbjct 262125 TGGCCATGGCCTTGTTCGAGATACCAGTGTCGGGGTGAACCTGCTTGAGGACACGGTAGA 262184 Query 1485713 CAAAGGACGAGTA 1485725 ||| |||||| Sbjct 262185 TGTAGGTCGAGTA 262197 >seq240 Length=223170 Score = 111 bits (122), Expect = 2e-18 Identities = 203/295 (69%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 429519 GGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578 || |||| ||||||||||||||| |||||| ||| || | ||||| ||||| Sbjct 202566 GGCTGGATCGTCGAGCGCCACCTCAAGGATGGCGACTACGTCCTCTTTAACCGTCAGCCC 202625 Query 429579 TCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCGGTCGCACCTTC 429638 ||| | |||| | ||| ||| | |||| | | || |||| | ||||||| Sbjct 202626 TCGTTGCACAAGATGTCCATGATGTCGCACAGGATCAAGCTCATGGACTACTCCACCTTC 202685 Query 429639 CGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAAC 429698 || |||||||| || ||| | ||||||||||| || ||||| |||||||||||| Sbjct 202686 CGTCTCAACCTCAGTGTCACGCCTCCATACAACGCCGATTTCGACGGTGACGAGATGAAC 202745 Query 429699 CTGCACGTGCCCC-AGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGCGTGGC 429757 ||||||| |||| | || ||| | | || ||||| || |||| | | | ||| | Sbjct 202746 TTGCACGTACCCCAAAGCGAAGA-GACTCGTGCCGAGCTCTCCCAAATCGCTTGGGTGCC 202804 Query 429758 CCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGAC 429812 | || || ||||| ||||||||||||||| |||| || | ||| |||| Sbjct 202805 TCGTCAGATTGTCTCGCCCCAGGCCAACAAGCCCGTCATGGGTATTGTGCAGGAC 202859 >seq229 Length=127810 Score = 107 bits (118), Expect = 3e-17 Identities = 307/464 (66%), Gaps = 6/464 (1%) Strand=Plus/Plus Query 2018913 CTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCAC 2018972 || || ||| | ||||||||||| || | |||||||| |||| |||||| || || Sbjct 41432 CTTCCCTGGGTAGAAAAGTACCGACCCATGCGTCTCGACGATGTCGTTGGCAACAAGGAC 41491 Query 2018973 GCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCG 2019032 || | | | ||||| | | |||||||||| || | ||| | | | Sbjct 41492 ACCATCGACCGTCTCAAAGTCATTCAGAACGACGGCAACTGTCCGCATCTCCTCATTTCT 41551 Query 2019033 GGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGC 2019092 || | || || | || |||||||| | || || ||||| | ||| | ||| Sbjct 41552 GGTCTTCCTGGTATTGGTAAGACCACCTCGGTACTCTGTCTTGCGCGAGCGCTTCTCGGC 41611 Query 2019093 GCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTC 2019152 | || | | |||| || || |||||||| || || || || ||||| || |||||| Sbjct 41612 GATGCATACAAAGAGGGGGTTCTTGAACTCAACGCATCCGATGAACGCGGTGTCGACGTC 41671 Query 2019153 GTGCGTAGAATCATCAAG-CATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCA 2019211 || || | | |||||| ||| || ||| | | || || || ||||| | || Sbjct 41672 GTTCGAAACAAGATCAAGACATTT-GCACAGAAGAAAGTCTCGCTCCCTCCCGGTAGACA 41730 Query 2019212 CAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCG 2019271 ||| | ||||||||||| ||||||||| || | || | || ||||||||||| | || Sbjct 41731 TAAGATTATCATCCTCGACGAGGCCGACAGCATGACTCCCGCCGCCCAGCAGGCATTGCG 41790 Query 2019272 ATCGACCATGGAAAAGTACACCAACACGACGCGGTT-TGCGCTGGCCTGCAA-CACGTCG 2019329 |||||||| | ||| ||||||| || |||| ||| | |||||||| || | Sbjct 41791 TAGAACCATGGAGATCTACTCCAACACAACCAGGTTCTGC-TTTGCCTGCAATCAGAGCA 41849 Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 | | | |||||||| | ||||| || ||||||||||| || Sbjct 41850 AC-AAGATCATCGAACCTATCCAGTCGCGATGCGCCATCTTACG 41892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916220338232555