Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq112 143 5e-29 seq55 111 3e-19 >seq112 Length=308905 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||| || || || || ||||| || || || || Sbjct 96542 TACCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 96601 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | |||||||| || || || ||||||||||| | || || ||||| |||| Sbjct 96602 TCAGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAG 96661 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| |||||||| || || ||||| || ||||| || || || | Sbjct 96662 GGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAA 96721 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| |||||||| ||||| | ||||| ||||| || ||||| Sbjct 96722 CCTCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 136 bits (150), Expect = 8e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| | || || | || ||||| || | ||| || || || || ||||| || || | Sbjct 96308 ATCAGTTGCCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGT 96367 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 |||| || | | || || || || || || ||||||||||| | || || || | Sbjct 96368 AATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGT 96427 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || || |||||||| |||||||| || || ||||| ||||| |||||| || Sbjct 96428 CGGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAG 96487 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || |||||||| || ||||||||||| ||||| |||||||| Sbjct 96488 ACTCGACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 >seq55 Length=29365 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || ||||| || ||||| || || || || | Sbjct 16213 TACCACCACGGAGACGAAGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 16272 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || || |||||||| |||| || || || || | Sbjct 16273 AGAGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTG 16332 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || || || || ||||| || | || | Sbjct 16333 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGA 16392 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||||||||| |||||||| Sbjct 16393 CCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 16441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824117983055