Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq55 104 2e-17 seq112 87.8 1e-12 >seq55 Length=29365 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || ||||| || ||| |||| || | || |||||||| || Sbjct 16022 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 16081 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | |||||||||||| | || | ||||| ||||| ||| || | | |||| Sbjct 16082 AATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGAATCTT-GGCCTTGACAT 16140 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| || || || |||| ||||| || ||||| || || || || | Sbjct 16141 TATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGA 16200 Query 33737 CAAAGATCTGCATA 33750 |||||||||||||| Sbjct 16201 CAAAGATCTGCATA 16214 >seq112 Length=308905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || || ||| || || |||||||| ||| Sbjct 96543 ACCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 96602 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || || ||||| ||||| ||||||||||| | || Sbjct 96603 CAGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGG 96662 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || ||| || | | |||| ||| | ||||| || || | Sbjct 96663 GATACCCTCCTTATCCTGAATCTT-GGCCTTGACATTGTCGATCGTGTCCGAAGACTCAA 96721 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||| || ||||| | || || |||||||| |||||| Sbjct 96722 CCTCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATA 96771 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||||||| || || || | || || | || || || ||||| Sbjct 96351 CTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 96410 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| |||||||| || | || | ||| || || || ||| || | | |||| Sbjct 96411 GATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTT-GGCCTTGACAT 96469 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| || || || || |||| ||||||||| ||||| || ||||| || | Sbjct 96470 TGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGA 96529 Query 33737 CAAAGATCTGCATA 33750 |||| ||||||||| Sbjct 96530 CAAAAATCTGCATA 96543 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || ||||| || ||| |||| || | || || || ||||| Sbjct 97263 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAA 97322 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||| |||||||| || | || | ||| || || || ||| || | | |||| Sbjct 97323 AATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTT-GGCCTTGACAT 97381 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| || || || || |||| || || || ||||| || | || |||| Sbjct 97382 TGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTA 97441 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 97442 CGAAGATCTGCAT 97454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703018510400