Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq241 205 9e-48 seq112 89.7 5e-13 >seq241 Length=120793 Score = 205 bits (226), Expect = 9e-48 Identities = 632/962 (66%), Gaps = 23/962 (2%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 ||||| || || || ||||||||||| ||| |||| | | ||||||| | ||| ||| Sbjct 70160 GCGATCGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCG 70219 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | ||| |||||| ||| || ||| || | || | ||| ||||| || |||||| Sbjct 70220 GTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGATTGGCA 70279 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA 147639 ||||| ||| |||| ||| | || ||||||||| |||| || | ||| | || Sbjct 70280 GCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGG-CGTA 70338 Query 147640 TGC-AGGTCCTGCGCTCGCACCCGCTGCCGAT--AGCGGCCCTCGTTTTCGTACCGCTCG 147696 || | ||| || || | ||| | |||| |||||| ||||| |||||| Sbjct 70339 CCAGAGCTTCTGGGCCTTGAC--GGTGCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCG 70396 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | |||||||| |||||||||||||| ||||| || ||||| |||| | || ||| Sbjct 70397 TAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCAC 70456 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 || |||||||| ||| | | ||| | ||| || ||||| || ||||| || Sbjct 70457 ATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGGACCCAGAGG 70516 Query 147817 GCGTACATAAGATCGCGCGCTTTGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAATTAAG 147875 ||||| | || || || || ||| ||||| || ||| || | || Sbjct 70517 GCGTAGAAGAGCTCTCGGGCAC-GCACCTCCTCCTTTCCGTGGTTCTTACGCAGGTCGAG 70575 Query 147876 CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT 147935 | | ||| || | |||||| || |||||||||| ||| | ||||| |||||| Sbjct 70576 GAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCAGGACGCTT 70635 Query 147936 T---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAG 147992 || ||||||||||| | ||| || |||||||||| || || | ||||||| | | Sbjct 70636 GTTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGAT 70695 Query 147993 GCCGCTCGCAGT-GCCGTTGGT---GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 ||| | || | ||| ||||| || | || | | ||| | || | || Sbjct 70696 ACCGTT-GCTGACGCCATTGGTACCGGCAATG---TAGGAACCGGTACCCCGAATGCAGT 70751 Query 148049 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAA-TCGCCCAA-TGT 148106 | | ||| | |||||||| ||| || ||| || || ||||| || | ||| Sbjct 70752 GGATGTTGAGACCAATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGT 70811 Query 148107 CGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTG 148166 ||| | ||||||||||| ||||| || | | | | |||||||| | | || Sbjct 70812 CGT--AAATGCCGTCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTG 70869 Query 148167 CGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACT 148226 || | || || || ||| |||||||| ||||| ||||| | ||||| Sbjct 70870 TGGGTGGGGAGTACCGGCGTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGA 70929 Query 148227 CATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGAC 148286 ||| | | || ||||| || || |||||||| | |||||| || || | || || Sbjct 70930 CATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTCCTGGCCGTGGATACCAACAGCAAC 70989 Query 148287 GCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCC 148346 ||||||||||||||||| || |||||||| || | |||||| ||| || || Sbjct 70990 ACGCATGAGCATGTGCTGGGGACGTTCGGCGACCTTGCCGTTGATACGGAGGAGGTAGGA 71049 Query 148347 ATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 |||||||| ||| |||||||| | ||||| | || || ||||||| |||||| Sbjct 71050 GCGCTCGAGGGTCTTGAAACCAAAGAAATTGTAGTGGAAGTCGCGCTCGTAGATGATGGC 71109 Query 148407 CG 148408 || Sbjct 71110 CG 71111 >seq112 Length=308905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| || | || | | ||||| || || |||||||| ||||||| || Sbjct 96321 ACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGT 96380 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| |||||||| ||||| | | |||| | ||||| || || ||||| || || Sbjct 96381 ACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACC 96440 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| ||| || || | | || | ||||| | | ||| || || | Sbjct 96441 CTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAG 96500 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| ||||| |||| || || | ||||||||||| Sbjct 96501 CGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | ||| || || |||||||| || |||| | Sbjct 97033 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCA 97092 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| || || || || || ||| || || | Sbjct 97093 AAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACA 97152 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| || || | || | || ||||| |||||||| ||| Sbjct 97153 TTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTT 97212 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 97213 ACGAAAATCTGCAT 97226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609740378200